New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2335236	14 (0.840)	4 (0.240)	4/280	1.6	22.4%	coding (203/1185 nt)	fadA	3‑ketoacyl‑CoA thiolase
	?	NC_002947	= 2335264	14 (0.860)					coding (231/1185 nt)	fadA	3‑ketoacyl‑CoA thiolase

TGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATGGCATGCAGGTGACCATTGGCGCAGGTCAGGAGCAGATCAGC  >  NC_002947/2335194‑2335396                                                                       |                                                                                                                                     tGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGa                                                       <  1:174480/150‑1 (MQ=255) tGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGa                                                       >  2:55608/1‑150 (MQ=255) accggACAGACATGCATAGAGTCACTGACGCGATCAACCATGTTAGGATGTCGGCGCAGGACTCCGGCCAGCCAAAATCGGTCAGCGTTCAGAACGACGACCGACAGAGTGCTACAGGCATGATGGCCATTGCCACGGCGGCGAAGCAGa                                                       >  2:249139/4‑150 (MQ=255)     gACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCAt                                                   >  2:9849/1‑150 (MQ=255)        tGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGt                                                >  1:81192/1‑150 (MQ=255)        tGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGt                                                >  1:81194/1‑150 (MQ=255)         gCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGtt                                               >  2:251983/1‑150 (MQ=255)          ccATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGc                                                                                                     >  2:197/1‑95 (MQ=255)          ccATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGc                                                                                                     <  1:197/95‑1 (MQ=255)           cATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGa                                             <  2:11978/150‑1 (MQ=255)            aTGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGAt                                            <  2:173361/150‑1 (MQ=255)             tGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATg                                           >  1:319685/1‑150 (MQ=255)                   gCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATGGCATGc                                     <  1:51121/150‑1 (MQ=255)                                        cGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGcccgggttgatcgcggcagtgccgctctgcatggca                                                                                                  <  2:159406‑M2/68‑37 (MQ=255)                                        cGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGcccgggttgatcgcggcagtgccgctctgcatggca                                                                                                  >  1:159406‑M2/1‑32 (MQ=255)                                         gggTCGGCTGTCGGCGCTGGCCGCCGGCCGAcccgggttgatcgcggcagtgccgctctgcatggcagtccccagcaccaggtcatcgacctgcgccggttcgatgccagcacgttctactgcggcgcggatagcgacagccgtcatgct               <  2:375742‑M2/150‑120 (MQ=255)                                             cGGCTGTCGGCGCTGGCCGCCGGCCGAcccgggttgatcgcggcagtgccgctctgcatggcagtccccagcaccaggtcatcgacctgcgccggttcgatgccagcacgttctactgcggcgcggatagcgacagccgtcatgctgggg           >  1:375742‑M2/1‑27 (MQ=255)                                                      gcgcTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATGGCATGCAGGTGACCATTGGCGCAGGTCAGGAGCAGATCAGc  <  1:348539/150‑1 (MQ=255)                                                                       |                                                                                                                                     TGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATGGCATGCAGGTGACCATTGGCGCAGGTCAGGAGCAGATCAGC  >  NC_002947/2335194‑2335396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.