New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2564260 =	31 (1.860)	4 (0.250)	4/272	1.5	12.6%	coding (33/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
	?	NC_002947	2564308 =	26 (1.640)					coding (81/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
Rejected: Frequency below/above cutoff threshold.

CAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAG  >  NC_002947/2564115‑2564407                                                                                                                                                  |                                                                                                                                                    cAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTg                                                                                                                                                 <  1:99356/150‑1 (MQ=255)  aGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTgg                                                                                                                                                >  1:333130/1‑150 (MQ=255)  aGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTgg                                                                                                                                                >  1:333122/1‑150 (MQ=255)  aGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTgg                                                                                                                                                >  2:23478/1‑150 (MQ=255)      aTCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCt                                                                                                                                                  <  2:197966/144‑1 (MQ=255)      aTCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCt                                                                                                                                                  >  1:197966/1‑144 (MQ=255)       tctcGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCg                                                                                                                                           >  1:264810/1‑150 (MQ=255)                               cATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGcc                                                                                                                   <  2:50776/150‑1 (MQ=255)                                  cTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTgg                                                                                                                >  1:141428/1‑150 (MQ=255)                                        cagtgcctggatctgtggggtgccgtaagcctccatgaacatggccgccgaacgcccggtggaatggtagccaggctgcgattcacgctcgaccagcagcacacgcTGCTGGCCGGCCAGGCGCCTCGCTGGGCTACCGCCTggccggcc                                                                                                          >  2:151991‑M1/107‑150 (MQ=255)                                            aCCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCcagca                                                                                                      <  1:192887/150‑1 (MQ=255)                                              ctggatctgtggggtgccgtaagcctccatgaacatggccgccgaacgcccggtggaatggtagccaggctgcgattcacgctcgaccagcagcacacgcTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCagcagc                                                                                                    >  1:242437‑M1/101‑150 (MQ=255)                                               tggatctgtggggtgccgtaagtctccatgaacatggccgccgaacgcccggtggaatggtagccaggctgcgattcacgctcgaccagcagcacacgcTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTggccggc                                                                                                           <  2:333265‑M1/43‑1 (MQ=255)                                               tggatctgtggggtgccgtaagtctccatgaacatggccgccgaacgcccggtggaatggtagccaggctgcgattcacgctcgaccagcagcacacgcTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTggccggc                                                                                                           >  1:333265‑M1/100‑142 (MQ=255)                                                   cgcATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGTTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGtgtg                                                                                               <  2:56559/150‑1 (MQ=255)                                                    gcATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGtgc                                                                                              <  2:207682/150‑1 (MQ=255)                                                       tttCTAAATTCTCCTATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGtgctgc                                                                                           <  2:92840/150‑1 (MQ=255)                                                       attCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGtgctgc                                                                                           <  2:92878/149‑1 (MQ=255)                                                         tCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTgg                                                                                                                >  1:59065/1‑127 (MQ=255)                                                         tCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTgg                                                                                                                <  2:59065/127‑1 (MQ=255)                                                         tCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGctgctg                                                                                         <  1:200018/150‑1 (MQ=255)                                                                     tatatTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGaa                                                                             <  1:286680/150‑1 (MQ=255)                                                                             aaTTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGcc                                                                     <  1:176362/150‑1 (MQ=255)                                                                                  tcATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGaa                                                                             >  1:346029/1‑137 (MQ=255)                                                                                  tcATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGaa                                                                             <  2:346029/137‑1 (MQ=255)                                                                                      aaaTGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCa                                                            >  1:122472/1‑150 (MQ=255)                                                                                                                  aTGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTc                                <  1:289570/150‑1 (MQ=255)                                                                                                                       cccGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGCATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGa                           >  2:53532/1‑150 (MQ=255)                                                                                                                       cccGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGa                           <  2:67614/150‑1 (MQ=255)                                                                                                                       cccGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGa                           <  1:343553/150‑1 (MQ=255)                                                                                                                                      ccTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCagcagc                                                                                                    <  1:223538/62‑1 (MQ=255)                                                                                                                                      ccTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCagcagc                                                                                                    >  2:223538/1‑62 (MQ=255)                                                                                                                                         gATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCcaca         <  2:264810/150‑1 (MQ=255)                                                                                                                                          atcatcGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTGCGGCGGCCATGTTCATGGAGGCTTACGGCACCCcacac        >  2:292799/1‑149 (MQ=255)                                                                                                                                                ggTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAg  <  1:23478/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAG  >  NC_002947/2564115‑2564407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.