New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2564260 =	31 (1.860)	4 (0.250)	4/272	1.5	12.6%	coding (33/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
	?	NC_002947	2564308 =	26 (1.640)					coding (81/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
Rejected: Frequency below/above cutoff threshold.

CCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGC  >  NC_002947/2564160‑2564444                                                                                                                                                     |                                                                                                                                         ctggatctgtggggtgccgtaagcctccatgaacatggccgccgaacgcccggtggaatggtagccaggctgcgattcacgctcgaccagcagcacacgcTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCagcagc                                                                                                                                         >  1:242437‑M1/101‑150 (MQ=255)      cgcATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGTTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGtgtg                                                                                                                                    <  2:56559/150‑1 (MQ=255)       gcATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGtgc                                                                                                                                   <  2:207682/150‑1 (MQ=255)          tttCTAAATTCTCCTATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGtgctgc                                                                                                                                <  2:92840/150‑1 (MQ=255)          attCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGtgctgc                                                                                                                                <  2:92878/149‑1 (MQ=255)            tCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGctgctg                                                                                                                              <  1:200018/150‑1 (MQ=255)                        tatatTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGaa                                                                                                                  <  1:286680/150‑1 (MQ=255)                                aaTTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGcc                                                                                                          <  1:176362/150‑1 (MQ=255)                                     tcATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGaa                                                                                                                  >  1:346029/1‑137 (MQ=255)                                     tcATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGaa                                                                                                                  <  2:346029/137‑1 (MQ=255)                                         aaaTGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCa                                                                                                 >  1:122472/1‑150 (MQ=255)                                                                     aTGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTc                                                                     <  1:289570/150‑1 (MQ=255)                                                                          cccGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGCATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGa                                                                >  2:53532/1‑150 (MQ=255)                                                                          cccGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGa                                                                <  1:343553/150‑1 (MQ=255)                                                                          cccGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGa                                                                <  2:67614/150‑1 (MQ=255)                                                                                         ccTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCagcagc                                                                                                                                         <  1:223538/62‑1 (MQ=255)                                                                                         ccTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCagcagc                                                                                                                                         >  2:223538/1‑62 (MQ=255)                                                                                            gATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCcaca                                              <  2:264810/150‑1 (MQ=255)                                                                                             atcatcGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTGCGGCGGCCATGTTCATGGAGGCTTACGGCACCCcacac                                             >  2:292799/1‑149 (MQ=255)                                                                                                   ggTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAg                                       <  1:23478/150‑1 (MQ=255)                                                                                                   gctgctggccggccaggcggtagcccagcgaggcgccggcgatgccagcaGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAg                                       >  1:242437‑M2/51‑150 (MQ=255)                                                                                                         ggccggccaggcggtagcccagcgaggcgcctggccggccagcaGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTg                                 >  2:151991‑M2/45‑150 (MQ=255)                                                                                                          gccggccaggcggtagcccagcgaggcgccggcgatgccagcaGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGACTTACGGCACCCCACAGATCCa                                        <  2:333265‑M2/99‑1 (MQ=255)                                                                                                          gccggccaggcggtagcccagcgaggcgccggcgatgccagcaGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGACTTACGGCACCCCACAGATCCa                                        >  1:333265‑M2/44‑142 (MQ=255)                                                                                                             tCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCCTGGTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGAccc                             >  2:293753/1‑150 (MQ=255)                                                                                                                              ggCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTc            >  2:183345/1‑150 (MQ=255)                                                                                                                              ggCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCAGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGAACCAGGCACTGACCCGCGCCAGCCGGGCCTTc            >  2:235473/1‑150 (MQ=255)                                                                                                                                   ccGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGa       >  2:131637/1‑150 (MQ=255)                                                                                                                                       cTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAgcg   <  2:141428/150‑1 (MQ=255)                                                                                                                                        tGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAgcgc  <  2:333122/150‑1 (MQ=255)                                                                                                                                        tGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAgcgc  <  2:333130/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                         CCTTGCGCATTTCTAAATTCTCATATATTAGAATTCTCATAAATGATAATTGCCTGGCAGGAGCGTGCATGACCCCGACCTACGACACCCTGATCATCGGTGCTGGCATCGCCGGCGCCTCGCTGGGCTACCGCCTGGCCGGCCAGCAGCGTGTGCTGCTGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGC  >  NC_002947/2564160‑2564444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.