New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2703660 =9 (0.540)3 (0.190) 3/276 1.8 26.5% coding (136/1188 nt) PP_2367 transport protein
?NC_002947 2703708 = 8 (0.500)coding (88/1188 nt) PP_2367 transport protein

ACAGTGACGACAGCAGGTTGCCAAGGGTGAAGATGGCCATCAGCGCCATCAGCGCAGCGCGCTTCCCAAAGCGGCTGAACAGCAGGGTCATGATCGGCGCGCCGACCATCACGCCAATGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCA  >  NC_002947/2703513‑2703803
                                                                                                                                                   |                                                                                                                                               
gagcgcaacgaccgcgaggtcagccctgacggcctggcgccaacctgggactgacaccgatgactgctcaaacaatgagacccggccgcgtgctcttcgcgttggccattggtgcctttggcatcggcactaccgagttcaccccgaTgg                                                                                                                                               >  1:95431‑M1/148‑150 (MQ=255)
 cAGTGACGACAGCAGGTTGCCAAGGGTGAAGATGGCCATCAGCGCCATCAGCGCAGCGCGCTTCCCAAAGCGGCTGAACAGCAGGGTCATGATCGGCGCGCCGACCATCACGCCAATGGCATAGGCGGTGATCAGCATGCCGGCGCTggg                                                                                                                                              <  1:65910/150‑1 (MQ=255)
  gcgcaacggccgcgaggtcagccctgacggcctggcgccaacctgggactgacaccgatgactgctcaaacaatgagacccggccgcgtgctcttcgcgttggccattggtgcctttggcatcggcactaccgagttcaccccgaTgggg                                                                                                                                             >  1:59368‑M1/146‑150 (MQ=255)
  gcgcaacggccgcgaggtcagccctgacggcctggcgccaacctgggactgacaccgatgactgctcaaacaatgagacccggccgcgtgctcttcgcgttggccattggtgcctttggcatcggcactaccgagttcaccccgaTgggg                                                                                                                                             >  2:82591‑M1/146‑150 (MQ=255)
                                           cctgggactgacaccgatgactgctcaaacaatgagacccggccgcgtgctcttcgcgttggccattggtgcctttggcatcggcactaccgagttcaccccgaTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGccc                                                                                                    >  1:138725‑M1/105‑150 (MQ=255)
                                            ctgggactgacaccgatgactgctcaaacaatgagacccggccgcgtgctcttcgcgttggccattggtgcctttggcatcggcactaccgagttcaccccgaTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGgca                                                                                                           <  1:156923‑M1/39‑1 (MQ=255)
                                            ctgggactgacaccgatgactgctcaaacaatgagacccggccgcgtgctcttcgcgttggccattggtgcctttggcatcggcactaccgagttcaccccgaTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGgca                                                                                                           >  2:156923‑M1/104‑142 (MQ=255)
                                                          gcgcTTCCCAAAGCGGCTGAACAGCAGGGTCATGATCGGCGCGCCGACCATCACGCCAATGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTc                                                                                     <  2:88822/150‑1 (MQ=255)
                                                                               cagcagGGTCATGATCGGCGCGCCGACCATCACGCCAATGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGc                                                                >  1:91924/1‑150 (MQ=255)
                                                                                           gATCGGCGCGCCGACCATCACGCCAATGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCaa                                                    >  2:210471/1‑150 (MQ=255)
                                                                                                                   aaTGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGtct                            >  1:122561/1‑150 (MQ=255)
                                                                                                                      ggCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCAt                         <  2:91924/150‑1 (MQ=255)
                                                                                                                       gCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCAtt                        <  2:122561/150‑1 (MQ=255)
                                                                                                                                        cATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCgg       >  1:207212/1‑150 (MQ=255)
                                                                                                                                             cGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCa  <  2:152097/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                               
ACAGTGACGACAGCAGGTTGCCAAGGGTGAAGATGGCCATCAGCGCCATCAGCGCAGCGCGCTTCCCAAAGCGGCTGAACAGCAGGGTCATGATCGGCGCGCCGACCATCACGCCAATGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCA  >  NC_002947/2703513‑2703803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.