New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2703660 =9 (0.540)3 (0.190) 3/276 1.8 26.5% coding (136/1188 nt) PP_2367 transport protein
?NC_002947 2703708 = 8 (0.500)coding (88/1188 nt) PP_2367 transport protein

GCGCTTCCCAAAGCGGCTGAACAGCAGGGTCATGATCGGCGCGCCGACCATCACGCCAATGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCAGTCCCAGGTTGGCGCCAGGCCGTCAGGGCTGACCTCGCGGCCGTTGCGCTCCAG  >  NC_002947/2703571‑2703857
                                                                                                                                         |                                                                                                                                                     
gcgcTTCCCAAAGCGGCTGAACAGCAGGGTCATGATCGGCGCGCCGACCATCACGCCAATGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTc                                                                                                                                           <  2:88822/150‑1 (MQ=255)
                     cagcagGGTCATGATCGGCGCGCCGACCATCACGCCAATGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGc                                                                                                                      >  1:91924/1‑150 (MQ=255)
                                 gATCGGCGCGCCGACCATCACGCCAATGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCaa                                                                                                          >  2:210471/1‑150 (MQ=255)
                                                         aaTGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGtct                                                                                  >  1:122561/1‑150 (MQ=255)
                                                            ggCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCAt                                                                               <  2:91924/150‑1 (MQ=255)
                                                             gCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCAtt                                                                              <  2:122561/150‑1 (MQ=255)
                                                                              cATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCgg                                                             >  1:207212/1‑150 (MQ=255)
                                                                                   cGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCa                                                        <  2:152097/150‑1 (MQ=255)
                                                                                           gggctgctgccggtcatcgcccagggcgtggaggtgagcatccccaTCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCAGTCCCAgg                                                >  1:138725‑M2/47‑150 (MQ=255)
                                                                                                  tgccggtcatcgcccagggcgtggaggtgagcatccccaTCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCAGTCCCAg                                                 >  2:156923‑M2/40‑142 (MQ=255)
                                                                                                  tgccggtcatcgcccagggcgtggaggtgagcatccccaTCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCAGTCCCAg                                                 <  1:156923‑M2/103‑1 (MQ=255)
                                                                                                                                    ccccaTCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCAGTCCCAGGTTGGCGCCAGGCCGTCAGGGCTGACCTCGCGGCCGTTgcgc       >  1:59368‑M2/6‑150 (MQ=255)
                                                                                                                                    ccccaTCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCAGTCCCAGGTTGGCGCCAGGCCGTCAGGGCTGACCTCGCGGCCGTTgcgc       >  2:82591‑M2/6‑150 (MQ=255)
                                                                                                                                      ccaTCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCAGTCCCAGGTTGGCGCCAGGCCGTCAGGGCTGACCTCGCGGTCGTTGCGCTc     >  1:95431‑M2/4‑150 (MQ=255)
                                                                                                                                         tCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCAGTCCCAGGTTGGCGCCAGGCCGTCAGGGCTGACCTCGCGGCCGTTGCGCTCCAg  >  1:66752/1‑150 (MQ=255)
                                                                                                                                         tCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCAGTCCCAGGTTGGCGCCAGGCCGTCAGGGCTGACCTCGCGGCCGTTGCGCTCCAg  >  1:66753/1‑150 (MQ=255)
                                                                                                                                         tCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCAGTCCCAGGTTGGCGCCAGGCCGTCAGGGCTGACCTCGCGGCCGTTGCGCTCCAg  >  1:297483/1‑150 (MQ=255)
                                                                                                                                         |                                                                                                                                                     
GCGCTTCCCAAAGCGGCTGAACAGCAGGGTCATGATCGGCGCGCCGACCATCACGCCAATGGCATAGGCGGTGATCAGCATGCCGGCGCTGGGGATGCTCACCTCCACGCCCTGGGCGATGACCGGCAGCAGCCCCATCGGGGTGAACTCGGTAGTGCCGATGCCAAAGGCACCAATGGCCAACGCGAAGAGCACGCGGCCGGGTCTCATTGTTTGAGCAGTCATCGGTGTCAGTCCCAGGTTGGCGCCAGGCCGTCAGGGCTGACCTCGCGGCCGTTGCGCTCCAG  >  NC_002947/2703571‑2703857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.