New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2458799 =	16 (0.960)	4 (0.290)	4/234	1.3	29.5%	intergenic (+85/‑96)	gapB/PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
	?	NC_002947	2458863 =	6 (0.440)					intergenic (+149/‑32)	gapB/PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein

TTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGCAGCAGCTAC  >  NC_002947/2458720‑2458993                                                                                                                                                |                                                                                                                                   gtGTAAGGCAATGAAAAAAGGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCa                                                                                                                              <  2:229690/149‑1 (MQ=255)            tGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCGCCTCCAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAAc                                                                                                                   <  2:310019/150‑1 (MQ=255)               aaaaaCGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGAGTTTACCCGCGAAGAGGCCAGCACCGGCAACCga                                                                                                                <  1:147193/150‑1 (MQ=255)                                       ttttttttttATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAAACCGCAACTAAAGGTTGATCGCTGCCCCGGTAGGATCGGGTTTAACCCCGAAGAGGGCAGCACCGGCACCCGACGAACCCAACGGTGCGCACAGccc                                                                                        >  1:350150/2‑150 (MQ=255)                                                              gttgtCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTc                                                                 <  2:314221/150‑1 (MQ=255)                                                                        ccGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCa                                                       >  2:248980/1‑150 (MQ=255)                                                                                      GGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCAcc                                         >  2:350150‑M1/1‑150 (MQ=255)                                                                                               gctcctacaggggcagcgataatcctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACt                                                                                    >  1:82859‑M2/50‑98 (MQ=255)                                                                                               gctcctacaggggcagcgataatcctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACt                                                                                    <  2:82859‑M2/49‑1 (MQ=255)                                                                                                ctcctacaggggcagcgataatcctgtaggagcggggttacccgcgaaAGGGCCGGCACTGACAACCTAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCACCCAAGGCCCCACCCTGGAGCGcc                               >  2:270196‑M2/49‑150 (MQ=255)                                                                                                 tcctacaggggcagcgataatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGACAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCt                              >  2:78539‑M2/48‑150 (MQ=255)                                                                                                                      cctgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGgcag         >  2:133135‑M2/27‑150 (MQ=255)                                                                                                                        tgtaggagcgggtttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGgcagca       >  1:60782‑M2/25‑150 (MQ=255)                                                                                                                        agtaggagcgggtttacccgcgaaGAGGCCAGCACAGGCAACCGAGAAACCCTACTGTGCGCAAAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGgcagca       >  1:154671‑M2/25‑150 (MQ=255)                                                                                                                             gagctgttttacccgcgaaGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGCAGCAGCTAc  <  1:232949‑M2/131‑1 (MQ=255)                                                                                                                                                |                                                                                                                                   TTGTAAGGCAATGAAAAAACGGGAACCTTCGGGTTCCCGTTTTTTTTTATTCTGAATGTGTGTTGTCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGATTATCGCTGCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACCGGCAACCGAGAAACCCTACTGTGCGCACAGCCCTACTGTTCATTCTGCTGCTACTCACCGCCTGCAACCAAGGCCCCACCCTGGAGCGCCTGGGTGGTCCGACCATGGGCAGCAGCTAC  >  NC_002947/2458720‑2458993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.