New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3773205 =	5 (0.300)	3 (0.190)	3/264	1.8	38.4%	coding (653/1494 nt)	PP_3331	membrane protein
	?	NC_002947	3773238 =	5 (0.320)					coding (686/1494 nt)	PP_3331	membrane protein

CTGGAACTGGGTCGGTGCATGGCTGCATTGGCTCTATCCGCTACGGGGCGGGTTCGGCTTCGACAACGGCTGGCGTACCCTGGTGATCGGCCTGTCCCTGGGCGCAACGGTCATGGCGCTCCTGGGCATGACCGTTGGCATACTGCGCCTGCGGCTGCGCAAGCGCTATCGCAGCGGCTCGTGCAGCCCCTACCCTGGCGGCTGGCTGCGCTGGCACCACATCGGCGGGCTACTGTTCGGCACGGTGCTGGTGCTGTGGGTATT  >  NC_002947/3773101‑3773364                                                                                                                                          |                                                                                                                               cTGGAACTGGGTCGGTGCATGGCTGCATTGGCTCTATCCGCTACGGGGCGGGTTCGGCTTCGACAACGGCTGGCGTACCCTGGTGATCGGCCTGTCCCTGGGCGCAATGGTCATGGCGCTCCTGGGCATGACCGTTGGCATACTGCGCCt                                                                                                                    >  2:127950/1‑150 (MQ=255)       cTGGGTCGGTGCATGGCTGCATTGGCTCTATCCGCTACGGGGCGGGTTCGGCTTCGACAACGGCTGGCGTACCCTGGTGATCGGCCTGTCCCTGGGCGCAACGGTCATGGCGCTCCTGGGCATGACCGTTGGCATACTGCGCCTGCGGCt                                                                                                              >  2:254047/1‑150 (MQ=255)       cTGGGTCGGTGCATGGCTGCATTGGCTCTATCCGCTACGGGGCGGGTTCGGCTTCGACAACGGCTGGCGTACCCTGGTGATCGGCCTGTCCCTGGGCGCAACGGTCATGGCGCTCCTGGGCATGACCGTTGGCATACTGCGCCTGCGGCt                                                                                                              >  2:94919/1‑150 (MQ=255)                                      ccGCTACGGGGCGGGTTCGGCTTCGACAACGGCTGGCGTACCCTGGTGATCGGCCTGTCCCTGGGCGCAACGGTCATGGCGCTCCTGGGCATGACCGTTGGCATACTGCGCCTGCGGCTGCGCAAGCGCTATCGCAGCGGCTCGTGCAGc                                                                               <  2:306257/150‑1 (MQ=255)                                       cGCTACGGGGCGGGTTCGGCTTCGACAACGGCTGGCGTACCCTGGTGATCGGCCTGTCCCTGGGCGCAACGGTCATGGCGCTCCTGGGCATGACCGTTGGCATACTGCGCCTGCGGCTGCGCAAGCGCTATCGCAGCGGCTCGTGCAGcc                                                                              <  1:20172/150‑1 (MQ=255)                                                                                                         caacggtcatgcccaggagcgccatgaccgttgGCATACTGCGCCTGCGGCTGCGCAAGCGCTATCGCAGCGGCTCGTGCAGCCCCTACCCTGGCGGCTGGCTGCGCTGGCACCACATCGGCGGGCTACTGTTCGGCACggtgctggtgc            >  2:278754‑M2/34‑150 (MQ=255)                                                                                                          aacggtcatgcccaggagcgccatgaccgttgGCATACTGCGCCTGCGGCTGCGCAAGCGCTATCGCAGCGGCTCGTGCAGCCCCTACCCTGGCggct                                                               <  1:202025‑M2/66‑1 (MQ=255)                                                                                                          aacggtcatgcccaggagcgccatgaccgttgGCATACTGCGCCTGCGGCTGCGCAAGCGCTATCGCAGCGGCTCGTGCAGCCCCTACCCTGGCggct                                                               >  2:202025‑M2/33‑98 (MQ=255)                                                                                                             GGTCATGGCGCTCCTGGGCATGACCGTTGGCATACTGCGCCTGCGGCTGCGCAAGCGCTATCGCAGCGGCTCGTGCAGCCCCTACCCTGGCGGCTGGCTGCGCTGGcac                                                 <  1:36820‑M1/109‑1 (MQ=255)                                                                                                             GGTCATGGCGCTCCTGGGCATGACCGTTGGCATACTGCGCCTGCGGCTGCGCAAGCGCTATCGCAGCGGCTCGTGCAGCCCCTACCCTGGCGGCTGGCTGCGCTGGcac                                                 >  2:36820‑M1/1‑109 (MQ=255)                                                                                                                   GGCGCTCCTGGGCATGACCGTTGGCATACTGCGCCTGCGGCTGCGCAAGCGCTATCGCAGCGGCTCGTGCAGCCCCTACCCTGGCGGCTGGCTGCGCTGGCACCACATCGGCGGGCTACTGTTCGGCACGGTGCTGGTGCTGTGGGTAtt  >  1:254047‑M1/1‑150 (MQ=255)                                                                                                                   GGCGCTCCTGGGCATGACCGTTGGCATACTGCGCCTGCGGCTGCGCAAGCGCTATCGCAGCGGCTCGTGCAGCCCCTACCCTGGCGGCTGGCTGCGCTGGCACCACATCGGCGGGCTACTGTTCGGCACGGTGCTGGTGCTGTGGGTAtt  >  1:94919‑M1/1‑150 (MQ=255)                                                                                                                                          |                                                                                                                               CTGGAACTGGGTCGGTGCATGGCTGCATTGGCTCTATCCGCTACGGGGCGGGTTCGGCTTCGACAACGGCTGGCGTACCCTGGTGATCGGCCTGTCCCTGGGCGCAACGGTCATGGCGCTCCTGGGCATGACCGTTGGCATACTGCGCCTGCGGCTGCGCAAGCGCTATCGCAGCGGCTCGTGCAGCCCCTACCCTGGCGGCTGGCTGCGCTGGCACCACATCGGCGGGCTACTGTTCGGCACGGTGCTGGTGCTGTGGGTATT  >  NC_002947/3773101‑3773364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.