New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5454984 =	NA (NA)	11 (0.510)	3/258	1.3	31.1%	intergenic (+27/‑328)	lnt/PP_4791	apolipoprotein N‑acyltransferase/transposase
	?	NC_002947	= 5456680	25 (1.130)					intergenic (+40/+121)	PP_4791/PP_4792	transposase/hypothetical protein

GCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGG  >  NC_002947/5454876‑5455090                                                                                                             |                                                                                                           gcgcTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTgg                                                                                 >  2:121161/1‑135 (MQ=255)  cgcTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTc                                                                                <  2:502201/136‑1 (MQ=255)     tCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTcgcg                                                                             <  1:253340/136‑1 (MQ=255)                                             gggcGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACg                                     <  1:377165/136‑1 (MQ=255)                                                 gTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCGGTGGCGCCGCAAACAAGAGGGGTTCGGCGTGAGTTGCgccgcgccgcggg                                 >  1:365382/1‑133 (MQ=21)                                                                     cAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGc             <  1:121161/136‑1 (MQ=255)                                                                                tGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCGGTGGCGCCGCCAACATGAGGTGTTCCGGGTGAGGTGCGCCGCGGCGCGGCCAATTTTTAAAAAAAAAAGCCGTTTGCCCgg  >  2:543042/1‑136 (MQ=9)                                                                                                             |                                                                                                           GCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGG  >  NC_002947/5454876‑5455090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.