| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5454984 = | NA (NA) | 11 (0.510) | 3/258 | 1.3 | 31.1% | intergenic (+27/‑328) | lnt/PP_4791 | apolipoprotein N‑acyltransferase/transposase |
| ? | NC_002947 | = 5456680 | 25 (1.130) | intergenic (+40/+121) | PP_4791/PP_4792 | transposase/hypothetical protein | |||||
CTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAGCCGGTGAATCAGTAGAACA > NC_002947/5456548‑5456811 | tttgTGGTGTTCTAACCCACTAGCCAAGACGGGCAGTTCGGGGCTTTGCTTCGAAATCCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGatc > 2:346345‑M2/2‑133 (MQ=255) ggggagttCGACACCACAACCCACGCCGGGCTGGTCCGGGCTTTGGTTCGCAAAGCCGGGAAACTGGTGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGatcacc > 1:330549‑M2/3‑130 (MQ=255) cgagcccaagccCGGCCGGTCGGGGCTTTGGTTCGCAACGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGatcacccagcccttccgggct > 1:228363‑M2/6‑115 (MQ=255) aGAAGCCAAGACCGGCCGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGatcacccagcccttccgggct > 2:500542‑M2/1‑115 (MQ=255) accaccgGCCGGTCGGGGCTTTGCTCCGCAACGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGatcacccagcccttccgggctgcgctgt > 2:584335‑M2/4‑108 (MQ=255) cccgggctggTCGGGGTTTTGCTTCCAAACGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGatcacccagcccttccgggctgcgctgtcg > 1:440271‑M2/5‑106 (MQ=255) tcgggtcTTTGCTTCGCAAAGCCGGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGaa < 2:380002/130‑1 (MQ=255) tCGAAAACCCGGGAAACTGGGTTATCAAGTGGTGGCCGGTTGTGTGCTTTGAAAACAATGGGTTGCTTTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGgaga < 2:496944/136‑1 (MQ=18) ggAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCcagcag < 1:3072/136‑1 (MQ=255) aaCTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTcgc < 2:134490/136‑1 (MQ=255) aCTGGGGGCCGCTTGAGGGCTTCGAAAACAATGGGGGGCATTGTGTTTGAGGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTcgcg < 1:207487/136‑1 (MQ=18) tggCCGCTTGAGTGCTTAGAAAACAATGGGTTTCATTTTGTTTGATGAGAGCTGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCaa < 2:342961/136‑1 (MQ=255) tggCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCaa < 2:104887/136‑1 (MQ=255) gggCCGCTTGAGTGCTTATAAAACAATGGGTTGCATTTTGTTTGTTGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCaa < 1:38807/135‑1 (MQ=255) gcttctgTGCTTATAAAACAAGGGGTTCCATTTTGTTTGATCCCAGCGGGTTAACCCGCCAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCg < 1:351384/130‑1 (MQ=18) gCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCg < 2:370300/136‑1 (MQ=255) gCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCg < 2:399347/136‑1 (MQ=255) gCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCg > 2:140031/1‑136 (MQ=255) tgTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCt < 1:535960/135‑1 (MQ=255) aGTGCTTAGAAAAGAATGGGTTGCATTTTGTTTTATGAGTGCGGGTTTACCCGCTAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGTGATTGGCCAGCAGTGCAGGCCCTTTCGCGGGCAAGCCCGGTCCt < 1:129551/136‑1 (MQ=21) aGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCt < 1:138959/136‑1 (MQ=255) aGTGATTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCt < 1:379432/136‑1 (MQ=255) tGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGatcacccagcccttccgggctgcgct > 1:465480‑M2/1‑39 (MQ=255) tGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGatcacccagcccttccgggctgcgct < 2:465480‑M2/65‑27 (MQ=255) cTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagaaaaggcggt > 1:239317‑M2/1‑37 (MQ=255) aGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAgggg > 2:452430/1‑136 (MQ=255) gggTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAg > 2:204590/1‑136 (MQ=255) ggTTGCATTTTGTTTGATGAGAGatcacccagcccttccgggctgcgctgtcgcacagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagaaaaggcggttggcccggtagggc < 2:327792‑M2/136‑114 (MQ=255) gTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCt < 1:40798/117‑1 (MQ=255) gTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCt > 2:40798/1‑117 (MQ=255) tttttGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAGCCGGTGa < 2:141730/135‑1 (MQ=255) ttgttgtttgATGTGCCCGGGTTTACCCGCGAATTCGGTAGTCGCGGCAACGGTGATCGGCGGGTGGAGTTTGGCCAGCAGGGCAGGCGCTTTCGCGGGCAAGCCCGGTCCTACAGGTGATTATGTAAGCCGGTGa < 2:123936/133‑1 (MQ=21) aTTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAGCCGGTGa > 2:383014/1‑136 (MQ=255) ttgATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAGCCGGTGAATCAGtt > 1:113365/1‑135 (MQ=255) ttgATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAGCCGGTGAATCAGTa < 1:122819/136‑1 (MQ=255) gagagatcacccagcccttccgggctgcgctgtcgcacagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagaaaaggcggttggcccggtagggccagccgccttttgctttg > 1:327792‑M2/1‑5 (MQ=255) | CTTGAGGAGTTCGAAACCAGAAGCCAAGACCGGCAGGTCCGGGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTATCAACTGGTGGCCGCTTGAGTGCTTAGAAAACAATGGGTTGCATTTTGTTTGATGAGAGCGGGTTTACCCGCGAATACGGTAGTCGCGGCAACGGTGAACGGCGGGTGGAGATTGGCCAGCAGGGCAGGCCCTTTCGCGGGCAAGCCCGGTCCTACAGGGGATTATGTAAGCCGGTGAATCAGTAGAACA > NC_002947/5456548‑5456811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |