New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1843211 =	4 (0.100)	3 (0.080) +CGAACTT	3/250	2.3	44.2%	coding (1625/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 1843218	4 (0.100)					coding (1618/2754 nt)	gacS	sensor protein GacS

TCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1843310‑1843211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAG  <  NC_002947/1843218‑1843169                                                                                                     |||||||                                                   TCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCCCGCCACCAACATGCCCGCCACGCACTGGAGCACCACCAGGA                       >  1:702420/1‑136            AAGGCACATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGAACTTGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACAGCGGCC            >  1:669377/1‑136                      ACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCACGAACTTGCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCACAGCGTGAG  >  1:948961/1‑136                                                                                                     |||||||                                                   TCAACCTGCCCAAGGCTCATGACGATGCCGAAGCGCTGCCACCGCAGCCATTGCTGGGCCGCCGTGCCGCCATTGTCGATGGCCACGAACTGGCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1843310‑1843211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGCGCCAGGCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAG  <  NC_002947/1843218‑1843169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.