| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1843211 = | 4 (0.100) | 3 (0.080) +CGAACTT |
3/250 | 2.3 | 44.2% | coding (1625/2754 nt) | gacS | sensor protein GacS |
| ? | NC_002947 | = 1843218 | 4 (0.100) | coding (1618/2754 nt) | gacS | sensor protein GacS | |||||
ACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGA > NC_002947/1843091‑1843352 | aCCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGGGCGCCacgtagt > 2:702420/1‑130 (MQ=255) gAACTCGAAGGGCCGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGGTAGtggcgc < 2:951022‑M2/136‑7 (MQ=255) gAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgc > 1:940305‑M2/1‑130 (MQ=255) aCTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGGGCGCCCGGTGGtggggcgg < 2:572673‑M2/136‑9 (MQ=255) gccgggcgggcggccggcaccccctgcagcaactggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTCGTGGCCATCGa > 2:361310‑M1/112‑136 (MQ=255) ggctggcggcctgcaccccctgcagcaactggtcgtaggaggcgaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagatcgGGGCGGGCCCCTTCGTGGgcatcgccgat < 2:822216‑M1/29‑6 (MQ=255) gccGGGCGGGCGGCCGGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttcgtggccatcga > 2:361310‑M2/1‑111 (MQ=255) ggctggcGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGATCGgggcgggccccttcgtgggcatcgccgat < 2:822216‑M2/136‑30 (MQ=255) gaggctaacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAgcg > 2:561010‑M1/70‑136 (MQ=255) caacaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCg > 1:575440‑M1/65‑136 (MQ=255) acaggctcacgctgaggccgcagtcttccagctggtgctccagtgcctggcgcgccagttagTGGCGCGCCCGTTAGTGGCCATCGACAAAGGCGGCACGGCGGCCCAGCAAAGGCTGCGgtggcagcgcataggc < 2:229536‑M1/74‑7 (MQ=255) ctcacgctgtggccgcagtcttccagctggtgctccagtgcctggcgcgcaagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGt > 1:948961‑M1/58‑136 (MQ=255) ctcacgcggcggccgcagtcttcctgcgggggctcctgggccgggcgcgcctgttcgGGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGt > 1:401072‑M1/58‑136 (MQ=255) gaggCTAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcg > 2:561010‑M2/1‑69 (MQ=255) caacAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcg > 1:575440‑M2/2‑64 (MQ=255) ggcggcagtcttcctgctggtgctcctgtgcctggcgcgccagttcgTGGGGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCtt > 2:171516‑M1/48‑136 (MQ=255) ggccgctgtgttcaaggtggtgctcctgtgcctggcgcgcctgtgggTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCtt > 2:815709‑M1/48‑136 (MQ=255) ggccgctgtcttccagctggtgctccagtgcctggcgcgcaagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGTGCCtt > 1:669377‑M1/48‑136 (MQ=255) ggccgcagtcttccagctggtgctccagtgcctggcgcgcctgttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCtt > 1:547787‑M1/48‑136 (MQ=255) ggccgcagtcttccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCtt > 2:494834‑M1/48‑136 (MQ=255) aCAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTAGtggcgcgcccgttagtggccatcgacaaaggcggcacggcggcccagcaaaggctgcggtggcagcgcataggc < 2:229536‑M2/136‑75 (MQ=255) cTCACGCTGTGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCaagttcgtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgt > 1:948961‑M2/1‑50 (MQ=255) cTCACGCGGCGGCCGCAGTCTTCCTGCGGGGGCTCCTGGGCCGGGCGCGCCTGTTCGgggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgt > 1:401072‑M2/1‑57 (MQ=255) tcctggtggtgctccagtgcgtggcgggcatgttggTGGCGGGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGa > 1:702420‑M1/37‑136 (MQ=255) tccagctggtgctccagtgcctggcgcgccagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGa > 1:654416‑M1/37‑136 (MQ=255) ccccggtggtgctcctgggcctggcgcgccagttcgTGGCGGGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGa > 1:209069‑M1/37‑136 (MQ=255) ggcggcAGTCTTCCTGCTGGTGCTCCTGTGCCTGGCGCGCCAGTTCGtggggcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagcctt > 2:171516‑M2/1‑47 (MQ=255) ggCCGCTGTGTTCAAGGTGGTGCTCCTGTGCCTGGCGCGCCTGTGGGtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagcctt > 2:815709‑M2/1‑47 (MQ=255) ggCCGCTGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCaagttcgtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgtgcctt > 1:669377‑M2/1‑40 (MQ=255) ggCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCTGTTCGtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagcctt > 1:547787‑M2/1‑47 (MQ=255) ggCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagcctt > 2:494834‑M2/1‑47 (MQ=255) tCCTGGTGGTGCTCCAGTGCGTGGCGGGCatgttggtggcgggccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagccttgggcaggttga > 1:702420‑M2/1‑29 (MQ=255) tCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagccttgggcaggttga > 1:654416‑M2/1‑36 (MQ=255) ccccggtggtgctCCTGGGCCTGGCGCGCCAGTTCGtggcgggccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagccttgggcaggttga > 1:209069‑M2/7‑36 (MQ=255) gggcgcgccagttggTGGGGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAAc > 1:337559‑M1/16‑136 (MQ=255) ggcgcgccagttcgGGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAAcc > 2:868173‑M1/15‑136 (MQ=255) gcgccagtgcgGGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCTGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTc > 1:684961‑M1/12‑136 (MQ=255) gcctgtgcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGc > 2:603304‑M1/10‑136 (MQ=255) gccagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGc > 1:572673‑M1/10‑136 (MQ=255) cagttcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGccc > 1:229536‑M1/8‑136 (MQ=255) tgcgTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCggg > 2:525782‑M1/5‑136 (MQ=255) gggcgcgccagttggtggggcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagccttgggcaggttgaggctgatccagaactgcgaac > 1:337559‑M2/2‑15 (MQ=255) ggcgcgccagttcggggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagccttgggcaggttgaggctgatccagaactgcgaacc > 2:868173‑M2/1‑14 (MQ=255) ggCGCGCCAGTTCGTTGCCATCGACAAAGGCGGCACGGCGGCCCAGCAAAGGCTGCGGTTGCAGCCCTTCGGCAACGTCATGAGCCAAGGTCAGGTTGAGGCTGATACACAACAGAGAACCATAGCCCCGGGTACt > 2:346239/1‑136 (MQ=255) gcgccagtgcggggcgcgccagttcgtggccatcgacaatggcggcacggctgcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagccttgggcaggttgaggctgatccagaactgcgaaccttc > 1:684961‑M2/1‑11 (MQ=255) gcgcCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTc > 1:255945/1‑136 (MQ=255) gcgcCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTc > 1:147083/1‑136 (MQ=255) gcctgtgcgtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagccttgggcaggttgaggctgatccagaactgcgaaccttcgc > 2:603304‑M2/1‑9 (MQ=255) gccagttcgtggcgcgccagttcgtggccatcgacaatggcggcacggcggcccagcaatggctgcggtggcagcgcttcggcatcgtcatgagccttgggcaggttgaggctgatccagaactgcgaaccttcgc > 1:572673‑M2/1‑9 (MQ=255) | ACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAATGGCGGCACGGCGGCCCAGCAATGGCTGCGGTGGCAGCGCTTCGGCATCGTCATGAGCCTTGGGCAGGTTGAGGCTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGA > NC_002947/1843091‑1843352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |