| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4854420 | 1 (0.020) | 10 (0.280) | 4/182 | 2.5 | 53.1% | intergenic (‑124/+173) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator |
| ? | NC_002947 | = 4854479 | 17 (0.470) | intergenic (‑183/+114) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator | |||||
GGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAG > NC_002947/4854418‑4854611 | gggCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACACGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGGTGAAATCTCCGC‑AAAAAAAAccc > 2:1248746/1‑135 (MQ=255) agcagcCCCGGCACTATGAGCTGCGAAGCTGAAATCCCGGCGCCGCTCCGCGCCCCTTTCGCGACACAACGCCGCTCCCACAAAAAAGCAGACCGCAACAGGGTTGAAATCTCCGC‑AAAAAAAACCGCCAAtgttg > 2:1010420/1‑136 (MQ=38) ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcggcccaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggt < 2:822748‑M2/136‑89 (MQ=255) ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggt < 1:374666‑M2/136‑89 (MQ=255) ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggt < 1:563831‑M2/136‑89 (MQ=255) ccccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggt < 1:140624‑M2/136‑89 (MQ=255) cccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtt < 1:740521‑M2/136‑90 (MQ=255) cccGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggta < 1:153402‑M2/136‑90 (MQ=255) ctctGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGttt > 1:340851/1‑136 (MQ=255) ctctGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCCCCCCTATCGCGACACAACGCCGCTCCCACAAAAAAGCAGACCGCAACTGCGTTGAAATCTCAGC‑AAAAAAAAAAGCCACAGTTGTCACCGGAGGttt > 1:713953/1‑136 (MQ=37) tgctgcGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAAAACCCCACTGTTGTCAGCGGCGGTTTTGAg > 2:324462/1‑136 (MQ=255) tgcGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATc > 1:799395/1‑136 (MQ=255) tgcGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATc < 1:394293/136‑1 (MQ=255) gAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgcccccgcccccgctgggtataaaccgcctcttattga < 1:645064‑M2/136‑108 (MQ=255) gAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGCCCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCCCCACTGTTGGCAGCGGCGGTTTTGAGTATAGCa > 2:1264471/1‑136 (MQ=255) gAAGCTGAAATCCCGGGGCCGCTTCGCAGccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtataaaccgcctcttattga < 1:789292‑M2/136‑108 (MQ=255) gAAGCTGAAATCCCGGGGCCGCTTCGCAGccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtataaaccgcctcttattga < 1:503670‑M2/136‑108 (MQ=255) gCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATg > 2:291428/1‑136 (MQ=255) cTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGc > 2:322120/1‑131 (MQ=255) cTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGc < 1:322120/131‑1 (MQ=255) aaaTCCCGGGGCCTCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCt > 2:858117/1‑136 (MQ=255) aaaTCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGcccg > 2:626538/1‑135 (MQ=255) aaaTCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCt > 2:346892/1‑136 (MQ=255) aaaTCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCt > 2:88535/1‑136 (MQ=255) cGGGGCCTCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAAc < 1:858117/136‑1 (MQ=255) gCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCa > 2:353814/1‑136 (MQ=255) cgcccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtatacaccgcctcttattgaattgtcaggcctttcccatgagctgc < 1:336406‑M2/136‑134 (MQ=255) | GGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCGCAACTGGGTTGAAATCTCCGC‑AAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAG > NC_002947/4854418‑4854611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |