New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 39447136 (0.780)4 (0.100) 4/258 6.1 10.9% intergenic (+53/‑35) yaiT/yaiV pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator
?NC_000913_3_bme_pgi = 394475 33 (0.790)intergenic (+57/‑31) yaiT/yaiV pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_bme_pgi/394319‑394471
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatgcccgtcaaATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAA  <  NC_000913_3_bme_pgi/394475‑394329
                                                                                                                                                                                                                                                                                                            
CACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCG                                                                                                                                                         <  2:477860/149‑1
   CAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCTGTCA                                                                                                                                                      >  2:593129/1‑149
                              TAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTA                                                                                                                           >  1:321457/1‑149
                                                    GTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAG                                                                                                     >  2:397988/1‑149
                                                          CAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGA                                                                                               <  2:321457/149‑1
                                                                    CCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGTCCGTCAAATCCTTGACGGGCATTATTTAGGACAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAG                                                                                     <  1:397988/149‑1
                                                                                                                                               TGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAG          >  1:784457/1‑149
                                                                                                                                                 CCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAG                             <  1:783150/128‑1
                                                                                                                                                 CCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAG                             >  2:783150/1‑128
                                                                                                                                                  CCGTGAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTGCGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCG       <  2:710435/149‑1
                                                                                                                                                       AAATCCTTGACGAGCATTAATTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAA  <  1:531012/149‑1
                                                                                                                                                                                                                                                                                                            
CACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_bme_pgi/394319‑394471
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatgcccgtcaaATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAA  <  NC_000913_3_bme_pgi/394475‑394329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.