New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 394471	36 (0.780)	4 (0.100)	4/258	6.1	10.9%	intergenic (+53/‑35)	yaiT/yaiV	pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator
	?	NC_000913_3_bme_pgi	= 394475	33 (0.790)					intergenic (+57/‑31)	yaiT/yaiV	pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTGAT  >  NC_000913_3_bme_pgi/394329‑394619                                                                                                                                               |                                                                                                                                                     ttCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAATTAATGCTCGTCAAGGAttt                                                                                                                                                >  1:531012/1‑149 (MQ=255)      cgcCTATACCGATGCTAACTACCTCGGTGGTGGTGACGCAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTCACgg                                                                                                                                           >  2:710435/1‑149 (MQ=255)         cTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCa                                                                                                                                        <  1:784457/149‑1 (MQ=255)                   gCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATACTGCCCGTCAAGGATTTGACGGGCATTACTGCaaa                                                                                                                              <  2:800132/149‑1 (MQ=255)                     tAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAgg                                                                                                                            >  1:523765/1‑149 (MQ=255)                         tACCTCGGTGGTGGTGACTCAGATCAAGACTGGTCCGCGAACGTGGGTTTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGAcgc                                                                                                                        <  2:531012/149‑1 (MQ=255)                          aCCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGAcgcg                                                                                                                       >  2:639772/1‑149 (MQ=255)                            ctccctggtcgttACGTAGATCAAGACTGGTCCTCGCACGTGGGTGTTAAATCTACCTGGTAATATTCTTCTCTCCGAAGAAATACTGGTAATTTAATCTAAATTATGCCCGTCCGTGATTTTATGGGCATTACTGCAAAGGACGcaca                                                                                                                     >  2:392102/6‑149 (MQ=255)                            cTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACggg                                                                                                                                          <  2:783150/128‑1 (MQ=255)                            cTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACggg                                                                                                                                          >  1:783150/1‑128 (MQ=255)                                     ggtgACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTACTCTAAATAATGCCCGTCAAGGATTTTACGGGCATTACTGCAAAGGACGCGCCAAGGTTAtt                                                                                                            >  2:405827/1‑148 (MQ=255)                                      gtgACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGCAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCt                                                                                                           >  1:771669/1‑149 (MQ=255)                                       cgACTTAGATAAAGACTGGTCCGCGAACGTGGTTGTTAAATATGCCTGGAAATATGAATAGCGCCCAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTg                                                                                                          <  1:392102/148‑1 (MQ=255)                                           gTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATCCTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGCCGCGAAAATGTTATCTGTatt                                                                                                      >  2:239506/1‑147 (MQ=255)                                               aTCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAGTTTAATCTAAATAATGCCCGTCAAGGATTTGACTGGCATTACTGCAAAGGACGCGCAACTGTTATCTGTAGTCaaa                                                                                                  >  2:680602/1‑149 (MQ=255)                                               aTCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTaaa                                                                                                  >  1:236218/1‑149 (MQ=255)                                                       tGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCa                                                                                          <  1:467681/149‑1 (MQ=255)                                                          tCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTGAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTAACTCTCGTTAAACCTCTTCAGGa                                                                                       >  2:360883/1‑149 (MQ=255)                                                               gAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTg                                                                                  <  1:438239/149‑1 (MQ=255)                                                                aaCGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTgg                                                                                 <  2:243873/149‑1 (MQ=255)                                                                  cGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTa                                                                               <  2:469324/149‑1 (MQ=255)                                                                              aaataCCTGGTAATATTCTTCACTACGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACCGGCATTACTGCAAAGGACGCTCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAAt                                                                   <  1:775387/147‑1 (MQ=255)                                                                                     tGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTc                                                            <  1:639772/149‑1 (MQ=255)                                                                                      ggTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTcc                                                           >  1:98748/1‑149 (MQ=255)                                                                                                tcgacaccGAAGAAAGTCGGGTAATTTACTCTAAATAAGGCCAGACAAGGATTTGGCGTGTAATACTGCAAAGGACGCGCAAGTTTTATCCGTAGGTATACCTCTTCAGGAATTTGGTAAGCGCGATAAATGTTTCTCCAGATACGCTa                                                 <  2:679771/143‑1 (MQ=255)                                                                                                     tCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTACAAAGGACGCGCAAATATTAACTGTAGTAAACCCTCTTCAGGAGTTTGGGAAGCCCGAAAAATCATTGACCCAATACGGTAcgcga                                            >  2:4984/1‑148 (MQ=255)                                                                                                     tCCGAAGAAAGACCGGTAATTTAATCTAAACAATCCCCGTCAAGGATTTTACCGGCATTACTTCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACgcgc                                            <  1:467629/149‑1 (MQ=255)                                                                                                              aTACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGttt                                   >  1:8042/1‑149 (MQ=255)                                                                                                                    gTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTcataat                             >  1:303990/1‑149 (MQ=255)                                                                                                                        tttAATCTAAATAATGCCCGTCAAGGATTGGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGaaa                         <  1:28270/149‑1 (MQ=255)                                                                                                                         ttAATCTAAATAATGCCCGTCAAGGATTCGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGaaaa                        <  1:224146/149‑1 (MQ=255)                                                                                                                                      tGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCCCTTCGAGTTTAATAATGAAAAGCAAGTTATAttt           >  2:508484/1‑149 (MQ=255)                                                                                                                                      tGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTCATCCGGGCTTTAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATAttt           <  1:792211/149‑1 (MQ=255)                                                                                                                                        cccGTCAAGGATTTGACGGGCATCACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGGTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTc         <  2:649278/149‑1 (MQ=255)                                                                                                                                         ccGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTcc        >  1:492303/1‑149 (MQ=255)                                                                                                                                               aGGATTTGTCGGGCATTACTGCTAATTACGTGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTGAt  <  2:771669/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     TTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTGAT  >  NC_000913_3_bme_pgi/394329‑394619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.