New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2753981 =	3 (0.090)	31 (0.920)	28/280	0.3	66.7%	intergenic (+35/+27)	bamE/ratB	lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein
	?	NC_000913_3_bme_pgi	4502091 =	28 (0.830)					intergenic (+501/+13)	yjgZ/insG	uncharacterized protein/IS4 transposase

GCAAAACTAAGCGATAGTGTGCATGATGGCGATCGGGTGGAGATTTATCGCCCTCTCATTGCCGATCCGAAAGAGCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/2754121‑2753981 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGC  >  NC_000913_3_bme_pgi/4502091‑4502233                                                                                                                                                                                                                                                                                              GCAAAACTAAGCGATAGTGTGCATGATGGCGATCGGGTGGATATTTATCGCCCTCTCAGTGCCGATCCGAAAGATCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCA                                                                                                                                         <  1:366385/149‑1                 GTGTGCATGATGGCGATCGGGTGGAGATTTATCGCCCTCTCATTGCCGATCCGAAAGAGCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTG                                                                                                                         >  1:311425/1‑149                                ATCGGGTGGTGATGTATGGCTCTCTGATTTGCGATCCGAAACAGCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACATAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCG                                                                                                          <  2:588643/149‑1                                 TCGGGTGGAGATTGATCGCCCTCTCATTGCCGATCCGAAAGAGCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGG                                                                                                         <  1:338084/149‑1                                          GATTTATCGCCCTCTCATTGCCGATCCGAAAGAGCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGG                                                                                                >  1:172154/1‑149                                            TTTATCGCCCTCTAATTGCCGATCCGAAAGAGCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGT                                                                                              <  1:332485/149‑1                                              TATCGCCCTCTCATTGCCGATCCGAAAGAGCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTAT                                                                                            <  2:288636/149‑1                                                   cgCTCTCATTGCCGTTCCGAAAGAGCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGGGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCA                                                                                       <  2:107078/147‑1                                                   CCCTCTCATTGCCGATCCGAAAGAGCTTCGCAGGCCACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGACTTTGGGCTATTTCCA                                                                                       >  1:265849/1‑149                                                    CCTCTCATTGCCGATCCGAAAGAGCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAG                                                                                      <  2:311425/149‑1                                                                GATCCGAAAGGGCTTCGCAGGCAATGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTT                                                                          <  1:81041/149‑1                                                                    CGAAAGAGCTTCGCAGGGAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCA                                                                      <  2:393795/149‑1                                                                      AAAGAGCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGAGCTTTGGGGTATTTCCAGGGCCTCTCCTTTACCACa                                                                    >  1:222559/1‑148                                                                              TCGCAGGTAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTCACTGGCTCTTTTTCGGTGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAA                                                            <  1:141727/149‑1                                                                                        CGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCC                                                  <  2:72522/149‑1                                                                                        CGAGCAGAAAAAGCAGCGAATAAATAGCAGAAAGAAAAAAGGTGCTCATTGAGTTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCATTCTCGGTAAGGCCCTTTCC                                                  <  2:222560/149‑1                                                                                             AGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCT                                             >  2:22228/1‑149                                                                                                   ATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGG                                       <  2:172154/149‑1                                                                                                      AGCGAACAAATAACAGAAAAAAAAAAGGTGCTCATTGAGCTAATGTCAGTCAGTTAAGCAACGGACTGGCTCTTTTACGGGGCTGTGTGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAA                                    <  1:234864/149‑1                                                                                                         GAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCA                                                                                       >  2:270556/1‑95                                                                                                         GAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCA                                                                                       <  1:270556/95‑1                                                                                                                TAACAGACAGAAAAAAGGTGCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACTATTCTCGCGAAGGGCCTTTCCCTTCTTGTTGGTAATTTCACAGGT                          >  1:325201/1‑149                                                                                                                     GACAGAAAAAATGTGCTCATTGAGGTACTGCCAGTCAGTTAAGCAATTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCGCATTGTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCC                     <  1:469960/149‑1                                                                                                                                GGTGCTCATTGAGCTAATGCCAGTCAGTTAAGTAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAA          <  1:239365/149‑1                                                                                                                                   GCTCATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCTTGGCTGTTGGGTATTTCGAGGGCCTCCCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTACTTTCACAAGTTGTCCCATACTTTCAAGAT       >  2:14279/1‑149                                                                                                                                       ATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCC                                                 <  1:392589/103‑1                                                                                                                                       ATTGAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCC                                                 >  2:392589/1‑103                                                                                                                                          GAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGTCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGC  <  2:34315/147‑1                                                                                                                                          GAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGC  >  1:34315/1‑147                                                                                                                                          GAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGC    >  1:390540/1‑145                                                                                                                                          GAGCTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGC    <  2:390540/145‑1                                                                                                                                                                                                                                                                                              GCAAAACTAAGCGATAGTGTGCATGATGGCGATCGGGTGGAGATTTATCGCCCTCTCATTGCCGATCCGAAAGAGCTTCGCAGGCAACGAGCAGAAAAATCAGCGAATAAATAACAGACAGAAAAAAGGTGCTCATTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/2754121‑2753981 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCACAAGTTGTCCCATACTTGCAAGATCGCGC  >  NC_000913_3_bme_pgi/4502091‑4502233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.