New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 3855212	37 (1.100)	4 (0.120)	4/268	4.1	11.2%	coding (400/498 nt)	yidF	putative Cys‑type oxidative YidJ‑maturating enzyme
	?	NC_000913_3_bme_pgi	= 3855263	28 (0.870)					coding (349/498 nt)	yidF	putative Cys‑type oxidative YidJ‑maturating enzyme
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGTCAAAAAG  >  NC_000913_3_bme_pgi/3855074‑3855350                                                                                                                                            |                                                                                                                                            aCGCGGATGTCGTATCAGGGGCAGCCCGTTTAAGCGCAAGTCATCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGca                                                                                                                                   <  1:203501/149‑1 (MQ=255)        tGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCa                                                                                                                           >  1:65660/1‑149 (MQ=255)         gTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCATCTCCATGGTAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCAc                                                                                                                          <  1:69548/149‑1 (MQ=255)          tCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTTCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACg                                                                                                                         <  1:111992/149‑1 (MQ=255)               tCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTc                                                                                                                    >  1:147389/1‑149 (MQ=255)                         cccGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGCCTcc                                                                                                          >  2:385487/1‑149 (MQ=255)                         cccGTTTAAGCCCACGTCACCGCAACCTCCCGTTTATCTCCATGGCAGAACGATGCTGCGTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGCA‑AGACGAAAACGCCTGATGTCCCGCACAA‑AGCCCCCTGCGTCGAGTCTcc                                                                                                          >  2:577932/1‑149 (MQ=255)                                   cgcACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGG‑GTACGGAGGAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTTTGGCGTCTTCTGCCGATCGt                                                                                                >  1:138900/1‑149 (MQ=255)                                        ggcACCGCAGCATCGTCATCAGTCCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCgac                                                                                           <  2:138900/147‑3 (MQ=255)                                        gTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCCTATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCggg                                                                                           >  2:266876/1‑149 (MQ=255)                                        gTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCggg                                                                                           <  2:112493/149‑1 (MQ=255)                                           aCCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGcac                                                                                        >  1:405275/1‑149 (MQ=255)                                            ccGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGcaca                                                                                       <  1:70/149‑1 (MQ=255)                                              gcagcaTCGTCATCAGCTCCATGGGAGAACGATGTTGATTTTTGCCTTCTCTCATCACCCGTATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAgg                                                                                     <  1:495069/149‑1 (MQ=255)                                                   aTCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGCCGAtc                                                                                <  2:405275/149‑2 (MQ=255)                                                    tCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAACCGCCTGAGGGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGc                                                                               <  1:385487/149‑1 (MQ=255)                                                    tCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGc                                                                               <  2:175040/149‑1 (MQ=255)                                                             gCTCCATGGGAGAACGGTGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAAGGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCAc                                                                      <  2:130810/149‑1 (MQ=255)                                                                 gaTGGGAGAACGTTGCTGCTTTGTCAGATCTAGCATCACCTGCATAGGGGGTGCGGAGTA‑AGAATAAATCGCCTGATAGAACTCACAA‑ATCACTTTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCt                                                                  <  1:292261/148‑1 (MQ=255)                                                                 cATGGGAGAACGATGCGGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATACTGGAGTTGAGA‑CCAACCCAAGGGCTCGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCt                                                                  <  1:292415/149‑1 (MQ=255)                                                                     ggAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGc                                                                                              >  1:380110/1‑117 (MQ=255)                                                                     ggAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGc                                                                                              <  2:380110/117‑1 (MQ=255)                                                                       agaACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGt                                                            >  1:382258/1‑149 (MQ=255)                                                                               gctgcgTTGTCAGATCAGGCAGCACCCGCATATGCGGTGCGGAGTG‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGGAGTCACAgcgc                                                    >  2:202414/1‑149 (MQ=255)                                                                                  gctTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCATGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCATGGCAGTCACAGCGCGGt                                                 >  1:461358/1‑149 (MQ=255)                                                                                        tCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGc                                              >  1:499031/1‑146 (MQ=255)                                                                                        tCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGc                                              <  2:499031/146‑1 (MQ=255)                                                                                              cACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAAT‑AAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGc                                    >  1:296352/1‑149 (MQ=255)                                                                                               aCGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGGCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGc                                    <  2:65660/149‑1 (MQ=255)                                                                                                       cccGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCacac                            <  2:488569/149‑1 (MQ=255)                                                                                                            atatGCGGTGCGGAGTA‑AGAAT‑AAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCAtttt                      <  2:296352/149‑1 (MQ=255)                                                                                                                    tgcggAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAgg               <  2:538458/149‑1 (MQ=255)                                                                                                                               gAATAAAACGCCTAATAGCCCGCACAA‑AGCACGCTGTCTGGCATCTCCTGCCGAGCATGCGGTCACAAGCGATGCCAGTCGCACGCCTGGCGGTAACAGCGCGGTTGCGTGGTTTCGCTGCCCCCCCATTTTTGTACAGTGGCggcgaa     >  2:10829/1‑144 (MQ=255)                                                                                                                                 aTAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGTCaaaaa   >  1:521739/1‑149 (MQ=255)                                                                                                                                  tAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGCGTTTTCGCTGCCACACCCTTTTTGTAAGGTGGCGTCAAAAAg  >  2:269737/1‑149 (MQ=255)                                                                                                                                      aCGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGt         >  2:431419/1‑138 (MQ=255)                                                                                                                                      aCGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGt         <  1:431419/138‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            ACGCGGATGTCGCATCAGGGGCAGCCCGTTTAAGCGCACGTCACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTA‑AGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGTCAAAAAG  >  NC_000913_3_bme_pgi/3855074‑3855350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.