New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 3855212	37 (1.100)	4 (0.120)	4/268	4.1	11.2%	coding (400/498 nt)	yidF	putative Cys‑type oxidative YidJ‑maturating enzyme
	?	NC_000913_3_bme_pgi	= 3855263	28 (0.870)					coding (349/498 nt)	yidF	putative Cys‑type oxidative YidJ‑maturating enzyme
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGTCAAAAAGCTCAATCGAGATACGACTGATATCTGCCCGCACCCAACACTCGAACAGGGCAATTAAAA  >  NC_000913_3_bme_pgi/3855116‑3855409                                                                                                                                                     |                                                                                                                                                   aCCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGcac                                                                                                                                                   >  1:405275/1‑149 (MQ=255)  ccGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGcaca                                                                                                                                                  <  1:70/149‑1 (MQ=255)    gcagcaTCGTCATCAGCTCCATGGGAGAACGATGTTGATTTTTGCCTTCTCTCATCACCCGTATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAgg                                                                                                                                                <  1:495069/149‑1 (MQ=255)         aTCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGCCGAtc                                                                                                                                           <  2:405275/149‑2 (MQ=255)          tCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAACCGCCTGAGGGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGc                                                                                                                                          <  1:385487/149‑1 (MQ=255)          tCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGc                                                                                                                                          <  2:175040/149‑1 (MQ=255)                   gCTCCATGGGAGAACGGTGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAAGGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCAc                                                                                                                                 <  2:130810/149‑1 (MQ=255)                       gaTGGGAGAACGTTGCTGCTTTGTCAGATCTAGCATCACCTGCATAGGGGGTGCGGAGTAAGAATAAATCGCCTGATAGAACTCACAA‑ATCACTTTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCt                                                                                                                             <  1:292261/148‑1 (MQ=255)                       cATGGGAGAACGATGCGGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATACTGGAGTTGAGA‑CCAACCCAAGGGCTCGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCt                                                                                                                             <  1:292415/149‑1 (MQ=255)                             agaACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGt                                                                                                                       >  1:382258/1‑149 (MQ=255)                                     gctgcgTTGTCAGATCAGGCAGCACCCGCATATGCGGTGCGGAGTGAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGGAGTCACAgcgc                                                                                                               >  2:202414/1‑149 (MQ=255)                                        gctTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCATGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCATGGCAGTCACAGCGCGGt                                                                                                            >  1:461358/1‑149 (MQ=255)                                              tCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGc                                                                                                         >  1:499031/1‑146 (MQ=255)                                              tCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGc                                                                                                         <  2:499031/146‑1 (MQ=255)                                                    cACGCATCACCCGCATATGCGGTGCGGAGTAAGAAT‑AAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGc                                                                                               >  1:296352/1‑149 (MQ=255)                                                     aCGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGGCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGc                                                                                               <  2:65660/149‑1 (MQ=255)                                                             cccGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCacac                                                                                       <  2:488569/149‑1 (MQ=255)                                                                  atatGCGGTGCGGAGTAAGAAT‑AAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCAtttt                                                                                 <  2:296352/149‑1 (MQ=255)                                                                          tgcggAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAgg                                                                          <  2:538458/149‑1 (MQ=255)                                                                                    gAATAAAACGCCTAATAGCCCGCACAA‑AGCACGCTGTCTGGCATCTCCTGCCGAGCATGCGGTCACAAGCGATGCCAGTCGCACGCCTGGCGGTAACAGCGCGGTTGCGTGGTTTCGCTGCCCCCCCATTTTTGTACAGTGGCggcgaa                                                                >  2:10829/1‑144 (MQ=255)                                                                                      aTAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGTCaaaaa                                                              >  1:521739/1‑149 (MQ=255)                                                                                       tAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGCGTTTTCGCTGCCACACCCTTTTTGTAAGGTGGCGTCAAAAAg                                                             >  2:269737/1‑149 (MQ=255)                                                                                           aCGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGt                                                                    >  2:431419/1‑138 (MQ=255)                                                                                           aCGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGt                                                                    <  1:431419/138‑1 (MQ=255)                                                                                                                aGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGTCAAAAAGc                                                            <  2:348810/126‑1 (MQ=255)                                                                                                                aGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGTCAAAAAGc                                                            >  1:348810/1‑126 (MQ=255)                                                                                                                           tGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGTCAAAAAGCTCAATCGAGATACGACTGATATCTGCCCGCAc                            <  2:142915/147‑1 (MQ=255)                                                                                                                           tGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGTCAAAAAGCTCAATCGAGATACGACTGATATCTGCCCGCAc                            >  1:142915/1‑147 (MQ=255)                                                                                                                                       ccGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCCGTCACAGCGCGGTGGCGGGTTTTCGCTGCCCCACCATTTTTGTAAGGTAGCGACAAAAAGCTAAATAGAGATACGACTGATATCTGCCGGCACCCAACACTCGAACa              >  1:157641/1‑149 (MQ=255)                                                                                                                                       ccGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACAACATTTTTGTAAGGTGGCGTCAAAAAGCTCAGTCGAGATACGACTGATATCTGCCCGCACCCAACACTCGAACa              <  2:484026/149‑1 (MQ=255)                                                                                                                                                   gCACAGGCGATGCCAGTCGCACGCCTGGCAGCGACAGCTAGGTTGCGGGTTTTAGCTTCAACACCATTTTTGTAAGGTGCAGACAAAAAGCTAAAACGAGATACGACAGATATATGCCCGCACCCAAAACTCGAAAAGGACAATTaaaa  >  2:314581/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ACCGCAGCATCGTCATCAGCTCCATGGGAGAACGATGCTGCTTTATCAGATCACGCATCACCCGCATATGCGGTGCGGAGTAAGAATAAAACGCCTGATAGCCCGCACAA‑AGCACGCTGTCTGGCGTCTCCTGCCGAGCGTGCGGGCACAGGCGATGCCAGTCGCACGCCTGGCAGTCACAGCGCGGTTGCGGGTTTTCGCTGCCACACCATTTTTGTAAGGTGGCGTCAAAAAGCTCAATCGAGATACGACTGATATCTGCCCGCACCCAACACTCGAACAGGGCAATTAAAA  >  NC_000913_3_bme_pgi/3855116‑3855409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.