| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 1113487 = | 52 (1.090) | 4 (0.110) +GCCTACATATCGACGATGATCAAGCTTTCCT |
3/222 | 6.0 | 9.0% | noncoding (71/98 nt) | RIP97 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP97 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_bme_pgi | 4235376 = | NA (NA) | intergenic (‑2143/‑531) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCACAGCCACTCAGCAAGGTCACCATGATGCTCACCACAATTAAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/1113628‑1113487‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGCGCATCTGCATGCGCGAAG > NC_000913_3_bme_pgi/4235376‑4235397 ||||||||||||||||||||||||||||||| CCACAGCCACTCAGCAAGGTCACCATGATGCTCACCACAATTAAACGCATTTGATACCTCTTTCGTAAACAAATACCGGAATAACGCCGATATTTTTATTGGCTCGTTGTTTTTCCCGGATGCGGCGTGGACGCCTTATCCTGCCaata > 2:610501/1‑145 CGGATGCGGCGTGAACGCCTTATCCGGCCTACATATCGACGATGATCAAGCTTTCCTTCGCGCATCTGCATGCGCGAAG < 1:279794/79‑1 CGGATGCGGCGTGAACGCCTTATCCGGCCTACATATCGACGATGATCAAGCTTTCCTTCGCGCATCTGCATGCGCGAAG > 2:279794/1‑79 CCTTATCCGGCCTACATATCGACGATGATCAAGCTTTCCTTCGCGCATCTGCATGCGCGAAG > 1:312/1‑62 CCTTATCCGGCCTACATATCGACGATGATCAAGCTTTCCTTCGCGCATCTGCATGCGCGAAG < 2:312/62‑1 ||||||||||||||||||||||||||||||| CCACAGCCACTCAGCAAGGTCACCATGATGCTCACCACAATTAAACGCATTTGATACCTCTTTCGTAAAAAAATACCGGCATAACGCCGGTATTTTTATTGGCTCGTTGTTTTTGCCGGATGCGGCGTGAACGCCTTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/1113628‑1113487‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGCGCATCTGCATGCGCGAAG > NC_000913_3_bme_pgi/4235376‑4235397 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |