New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	1113487 =	52 (1.090)	4 (0.110) +GCCTACATATCGACGATGATCAAGCTTTCCT	3/222	6.0	9.0%	noncoding (71/98 nt)	RIP97 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP97 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_bme_pgi	4235376 =	NA (NA)					intergenic (‑2143/‑531)	lysC/yjbE	lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTACGAAGGGATAAAGCTCAATCCACTGGCATTGCGTAAACCGGATGCGGCTTCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATGGTGACCTTGCTGAGTGGCTGTGGCAGCA  >  NC_000913_3_bme_pgi/1113345‑1113633                                                                                                                                               |                                                                                                                                                   attaCTAAGGAGTAAAGTCCAGTCTATTGGCATTGCCGAAACCGGAATCAGCGCAGAAATAAAAACGGAGTTGCCTGATGCGCAACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATaa                                                                                                                                              <  2:161388/149‑1 (MQ=255) attaCGAAGGGATAAAGCTCAATCCACTGGCATTGCGTAAACCGGATGCGGCTTCGCAATCAAAACGCAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATaa                                                                                                                                              >  2:554576/1‑149 (MQ=255) actaCGGAGGGATAAAGCTCAATCCCCTGGCATTGCGTAAACCGGATGCGGCTTCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATaa                                                                                                                                              <  1:517286/147‑1 (MQ=255)      gAAGGGATAAAGCTCAATCCACTGGCATTGCGTAAACCGGATGCGGCTTCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGt                                                                                                                                         >  1:612883/1‑149 (MQ=255)      gAAGGGATAAAGCTCAATCCACTGGCATTGCGTAAACCGGATACGGCCGCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGt                                                                                                                                         >  1:198413/1‑149 (MQ=255)            aTAAAGCTCAATCCACTGGCATGGCGTAAACCGGATGCGGCTTCGAAATAAAAAAGTAGTTGCCTCATACGCTGCGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGACGGATAAGGCGTTCgcgc                                                                                                                                   >  2:137077/1‑149 (MQ=38)             tAAAGCTCAATCCACTGGCATTGCGTAAACCGGATGCGGCTTCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCAcgcc                                                                                                                                  >  2:797350/1‑149 (MQ=255)                       tCCACTGGCATTGCGTAAACCGGATGCGGCTTCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTAACACGATTACGGGTGTCAGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                                        >  1:650072/1‑149 (MQ=25)                           cTGGCATTGCGTAAACCGGATGCGGCTTCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTAGTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCaaaaa                                                                                                                    <  2:746493/149‑1 (MQ=255)                                 ttGCGTAAACCGGATGCGGCTTCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGa                                                                                                              >  1:94993/1‑149 (MQ=255)                                 ttGCGTAAACCGGATGCGGCTTCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGAATTTCCGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGa                                                                                                              >  1:781994/1‑149 (MQ=255)                                              aTGCGGCTTCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATa                                                                                                 >  1:61041/1‑149 (MQ=255)                                                  ggCTTCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCACAAACAACGAGCCAATAAAAATACAgg                                                                                             >  1:507714/1‑149 (MQ=255)                                                         cAATAAAAACGTAGTTGCCTGATGCGCTACGCTTAACAGGCCTACATCGTTCCTGCAATTTATTGCTTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCAGCGTTATg                                                                                      >  1:327750/1‑149 (MQ=255)                                                           aTAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGGTTTGGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTCTGcc                                                                                    >  1:199360/1‑149 (MQ=255)                                                           aTAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGcc                                                                                    >  1:615578/1‑149 (MQ=255)                                                            tAAAAACGTAGTTGCCTTATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTTTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCg                                                                                   <  1:312196/149‑1 (MQ=255)                                                                aaCGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAGTAAAAATACCGGCGTTATGCCGGTAt                                                                               >  1:780030/1‑149 (MQ=255)                                                                    tAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTc                                                                                                                                                    >  1:643820/1‑76 (MQ=255)                                                                    tAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTc                                                                                                                                                    <  2:643820/76‑1 (MQ=255)                                                                       ttGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTa                                                                        >  1:542062/1‑149 (MQ=255)                                                                       ttGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATACCGGTATTTTTTTa                                                                        >  2:14170/1‑149 (MQ=255)                                                                            tGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGaaa                                                                   <  1:540331/149‑1 (MQ=255)                                                                              aTGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAaga                                                                 <  2:542062/149‑1 (MQ=255)                                                                               tGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAagag                                                                <  2:61041/149‑1 (MQ=255)                                                                                         ttATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATg                                                      >  2:354024/1‑149 (MQ=255)                                                                                            tCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGt                                                   <  2:199954/149‑1 (MQ=255)                                                                                              aGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGttt                                                 >  1:239344/1‑149 (MQ=255)                                                                                                  cTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAAtt                                             <  1:797350/149‑1 (MQ=255)                                                                                                    aCATCGTTCCTGCAATTTATTGATTTTGCAAGCCTTTGTGGGTCGGATAAGCCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGCCGTTATGACGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAAtttt                                           >  2:82090/1‑147 (MQ=255)                                                                                                     cATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCCCGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCAGCGTTATGACGGTATTTTTTTACGAAAGGGTTATCAAATGGGTTTAATtctg                                          >  2:60768/1‑149 (MQ=38)                                                                                                       gcGTTCCTGCCATTTATTGTTTTTGCAAGACTTTGTGGGCCGGATAAGGCCTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAACATACCTGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTgtggt                                        <  2:318743/148‑1 (MQ=38)                                                                                                         gTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTa                                                                        <  2:668437/115‑1 (MQ=255)                                                                                                         gTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTa                                                                        >  1:668437/1‑115 (MQ=255)                                                                                                         gTTCCTGCAATTTAGTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTgtggtca                                      <  2:531970/149‑3 (MQ=255)                                                                                                          ttCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCAGGTATTTTTTTACGAAAGGTGTATCAAATGCGTTGAATTGTTGTGAg                                     >  2:776350/1‑149 (MQ=38)                                                                                                              tGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGcatc                                 >  2:235894/1‑149 (MQ=255)                                                                                                               gCAATTTATTGATTTTGCAAGACTTTGTGGGTCGAATAAGGCGTTCACGACGAATCCGGCAAAAACAACGAGCCAATAAAAATACCGTCTTTATGCCGGTATTGTTGTACGAAATAGGTATCAAATGCGTTTAATTGTGGTGAGcatca                                <  2:198413/149‑1 (MQ=255)                                                                                                                cAATTTACTGATTTTGCAAGCCTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAACACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGcatcat                               <  1:376023/149‑1 (MQ=255)                                                                                                                 aaTTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATg                              <  1:354024/149‑1 (MQ=255)                                                                                                                  agttATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCTTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATgg                             <  1:305694/147‑1 (MQ=255)                                                                                                                   tttATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATGGt                            <  1:252359/149‑1 (MQ=255)                                                                                                                      aTTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATGGTGAc                         >  1:814097/1‑149 (MQ=255)                                                                                                                      aTTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATGGTGAc                         >  1:815080/1‑149 (MQ=255)                                                                                                                            tttGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATGGTGACCTTGCt                   <  1:487642/149‑1 (MQ=255)                                                                                                                                caggACTTGGTGAGTCGTATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATGGTGACCTTGCTGAGt               <  2:38222/146‑1 (MQ=255)                                                                                                                                cAAAACTTTGTGGGTCGGATAAGGCGTTCCCGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATGGTGACCTTGCTGAGt               <  1:721189/149‑1 (MQ=255)                                                                                                                                 aaGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTa                                                <  1:44767/115‑1 (MQ=255)                                                                                                                                 aaGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTa                                                >  2:44767/1‑115 (MQ=255)                                                                                                                                        tgtgGTGCGGATAAGGCGCGCACGCCGCAACCGGCAAAAACAACGAGCCAAGAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATGGTGACCTTGCTGAGTGGCTGTgg       <  2:610505/149‑1 (MQ=255)                                                                                                                                          tgGGTCGGATAAGGCGTCCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATGGTGACCTTGCTGAGTGGCTGTGgca     <  1:5938/149‑1 (MQ=255)                                                                                                                                             gTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATGGTGACCTTGCTGAGTGGCTGTGgcagca  <  1:554576/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                   ATTACGAAGGGATAAAGCTCAATCCACTGGCATTGCGTAAACCGGATGCGGCTTCGCAATAAAAACGTAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATCGTTCCTGCAATTTATTGATTTTGCAAGACTTTGTGGGTCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAGCCAATAAAAATACCGGCGTTATGCCGGTATTTTTTTACGAAAGAGGTATCAAATGCGTTTAATTGTGGTGAGCATCATGGTGACCTTGCTGAGTGGCTGTGGCAGCA  >  NC_000913_3_bme_pgi/1113345‑1113633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.