| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 1207805 | 6 (0.190) | 21 (0.750) | 19/256 | 0.5 | 75.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_bme_pgi | = 1209602 | 8 (0.290) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
ATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG > NC_000913_3_bme_pgi/1207659‑1207946 | agcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgttgccatttgcttgttatttcttcattttcataaacgTTGGTTTGTGGGAAGGAg < 2:126375‑M1/18‑1 (MQ=255) cGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCACACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctc > 1:159963‑M1/1‑144 (MQ=255) ttacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccatggtaaaagcaggaatgaagccatttgcttgttatttcttcattttcataaacgTTGGTTTGGAAGCAGGAGCACAAc < 2:221024‑M1/24‑1 (MQ=255) cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac > 1:298672‑M1/1‑138 (MQ=255) gttgtagatccgctttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa > 2:175493‑M1/122‑149 (MQ=255) ggAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg < 1:192962‑M1/149‑18 (MQ=255) ggAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg > 2:352430‑M1/1‑132 (MQ=255) agatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag > 2:280273‑M1/117‑149 (MQ=255) aggctggcacgacCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcc < 2:441666‑M1/144‑24 (MQ=255) cacCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg < 1:237359‑M1/148‑34 (MQ=255) tttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcgagcatgatgccatttgcttgttatttcttcattttcataaacgTTAGGTTGGGAGACGGAGCAAAACGCAATGACGCAACGGCCA‑CATgagggc < 1:242898‑M1/51‑3 (MQ=255) gatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCCCCg < 1:149003‑M1/57‑1 (MQ=255) cttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCCAATCTGATGGCAATGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctcttcattacctgttggtgtcctgtttgcgtggccatcacc > 1:71232‑M1/1‑107 (MQ=255) ttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGt > 1:362929/1‑149 (MQ=255) acCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccac > 2:418637‑M1/1‑104 (MQ=255) acCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccac > 1:150301‑M1/1‑104 (MQ=255) cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcggccactc > 2:139907‑M1/1‑102 (MQ=255) cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATAGGATGGCACTGTGCAAACGGCTATCGAAACCCTTGGTCTGGGAGAAGGAGACAAACTCAATGCAGCAACGGCTA‑CACTAGGACGACCCGGtccca > 1:112200/1‑145 (MQ=18) gctgctGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACATTGGTTTGGGACAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcccctccgccaacaggct > 1:484757‑M1/1‑90 (MQ=255) gcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTGCATAGCTATACCGGTTAt < 1:141923‑M1/79‑1 (MQ=255) tgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAt > 2:382248‑M1/68‑149 (MQ=255) aaatccccctggtaaaagcaggaatgatgccatctgattgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggt > 1:238649‑M1/64‑149 (MQ=255) gCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaat > 2:363238‑M1/1‑76 (MQ=255) cctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCAACGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTg < 1:437651‑M1/93‑1 (MQ=255) aTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcccctccgccaacaggctggctgcaatgcaatggtacc > 1:207315‑M1/1‑70 (MQ=255) ggtaaaagcaggaatgatgccatttggttgttatttcttcattttcataaacgTTGGTTTGGGAGCAGGCGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGAGGCACCGGTTTCATCACTGTACCGGGTGTGAGTGTTGCTCTTGagt < 2:444169‑M1/96‑2 (MQ=255) taaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCaa > 1:517706‑M1/52‑149 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt > 2:399564‑M1/50‑141 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt < 1:399564‑M1/92‑1 (MQ=255) gATAACAAATCGGACGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgc < 2:214726‑M1/149‑91 (MQ=255) atatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccctagtccgttgccttcagccactccgccagcaggctggctgaaatgcaatggtgccgctttttctgct < 1:241118‑M1/149‑92 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaa < 1:352430‑M1/149‑95 (MQ=255) aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAg > 1:269420/1‑149 (MQ=255) gccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGt > 1:327215‑M1/36‑149 (MQ=255) gATGGCACTGTGCAAACGGCTCTCGAAAAACATGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcagccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatcccc > 2:191622‑M1/1‑47 (MQ=255) cttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCACTCAGTAACGATTCAGTGGGGGTgg < 1:476769‑M1/122‑1 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGGAAAGGCTA‑CATTAGGACGCACAGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTggg > 1:7405/1‑148 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggacct > 2:295721‑M1/1‑41 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaact > 2:6652‑M1/1‑41 (MQ=255) ttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑GATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGGGGAATGCCGCaaa < 1:155594‑M1/133‑1 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaataccgggaactggcaaaggctt > 1:252078‑M1/1‑30 (MQ=255) tttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt < 2:438181‑M1/138‑1 (MQ=255) tcataaacgTTGGTTTGGGAGAAGGAGCAAACCTCAAGGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCt > 2:297897‑M1/10‑149 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcccccaacaggctggctgaaatgcaatggtgccgctgtttctgctgaagaatacccggaactggcaaaggcttatcgg > 2:19478‑M1/1‑25 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGC‑CCATACTCTAGCATTAGGCAGAACCGTTTTCATACCTTTACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAGAGCATCTGc > 2:525035/1‑149 (MQ=255) agacattggtgtGGGAGAAGGatgtgcattacctgttggtgtcccggttccgtggccttcagccactccgcgaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaggggcttatccgacaa > 2:231225‑M1/6‑21 (MQ=255) gtgatcGGAGAAGGAGCAAAAGTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCCATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTggggg > 2:544749‑M1/7‑149 (MQ=255) gggttGGGAGAAGGTGCGAAACTCAATGCAGCACCGACTA‑CCGTATGTCCGATCTGTGTCATAGCTATAAAAATTAAGCTTGGTATTAGTGATCATTCAGTAATCATTCAGTGGTTGTGGAATGCCGCAAAAGCATCTGCCTCTggggg < 2:497479/146‑1 (MQ=255) ttGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcc < 2:150301‑M1/149‑139 (MQ=255) gagaAGGctctgcattacttgttggtgttccgggtccgtggccttcagccactccgccaacaggctggctgaaatgcattggtgccgctttttgtgctgaagaatacgcggaactggcaaaggcttattcgagatataagttgcctgat > 2:64072‑M1/1‑7 (MQ=255) gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgat < 2:354696‑M1/149‑143 (MQ=255) | ATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTA‑CATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGG > NC_000913_3_bme_pgi/1207659‑1207946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |