| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 1207805 | 6 (0.190) | 21 (0.750) | 19/256 | 0.5 | 75.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_bme_pgi | = 1209602 | 8 (0.290) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
CACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGC > NC_000913_3_bme_pgi/1209454‑1209748 | cacGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCagag > 1:295487/1‑149 (MQ=255) aTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc < 2:354696‑M2/149‑8 (MQ=255) aTCAGGCAACTTATATCTCGAATAAGCCTTTGCCAGTTCCGCGTATTCTTCAGCACAAAAAGCGGCACCAATGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGACCCGGAACACCAACAAGTAATGCAGAGccttctc > 2:64072‑M2/1‑142 (MQ=255) ggCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaa < 2:150301‑M2/149‑12 (MQ=255) ttGTCGGATAAGCCCCTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTCGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCACATccttctcccacaccaatgtct > 2:231225‑M2/1‑128 (MQ=255) ccgatAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAACAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGGGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcga > 2:19478‑M2/3‑124 (MQ=255) cGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa < 1:61124/149‑1 (MQ=255) aaGCCTTTGCCAGTTCCCGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagcc > 1:252078‑M2/1‑119 (MQ=255) aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 2:6652‑M2/1‑108 (MQ=255) aGGTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 2:295721‑M2/1‑108 (MQ=255) ggggATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCTGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccatgtttttcgagagccgtttgcacagtgccatc > 2:191622‑M2/1‑102 (MQ=255) ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttga < 1:352430‑M2/149‑56 (MQ=255) ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatca > 2:222585/1‑149 (MQ=255) agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAGGGCCACGGAACCGGGAAACCAACAGGTAATGCCGAGCCTTCTCCCAAACCAACGTTTCTGAAAATGAAGAAATAACAAGCAAACGGCGTCATTc > 1:159175/1‑149 (MQ=255) agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGCTGGCGGAGTGGCTGAAGGCAACGGACTAGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatat < 1:241118‑M2/149‑59 (MQ=255) gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccgtccgatttgttatc < 2:214726‑M2/149‑60 (MQ=255) agAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg < 1:354696/149‑1 (MQ=255) ggTACCATTGCATTGCAGCCAGCCTGTTGGCGGAGGGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggat > 1:207315‑M2/1‑79 (MQ=255) aTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc > 2:363238‑M2/1‑73 (MQ=255) agccTGTTGGCGGAGGGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttgtcccaaaccaatgttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagc > 1:484757‑M2/1‑59 (MQ=255) tgtgGGCGGAGGAGCGGAAGGACACGGAACCGCGAAACCAACAGGTAAGGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGCAATAACAACCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc < 2:164186/149‑1 (MQ=255) gAGTGGCTTAAGGCCACGGAACCGGGACACCAACAGGTACTGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGACGAAATAACAAGCAAATTGCATCATTCCTGCTTTTACCAGTGCGATTTAACATTCGTATTGGCTATGTAct > 2:436048/1‑148 (MQ=255) gAGTGGCCGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcg > 2:139907‑M2/1‑47 (MQ=255) gTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt > 1:150301‑M2/1‑45 (MQ=255) gTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt > 2:418637‑M2/1‑45 (MQ=255) ggtgaTGGCCACGCAAACAGGACACCAACAGGTAATGAAGAGccttctcccaaaccaaggttttcgagagccgtttgcacattgccatcagattggatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaag > 1:71232‑M2/3‑42 (MQ=255) cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtg < 1:237359‑M2/149‑117 (MQ=255) ggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccagcct < 2:441666‑M2/149‑127 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcc > 2:352430‑M2/1‑17 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcc < 1:192962‑M2/149‑133 (MQ=255) ggTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAc < 1:222585/149‑1 (MQ=255) gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctg > 1:298672‑M2/1‑11 (MQ=255) gagagccttctcccaaaccaaggttttcgagagccgtgtgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccg > 1:159963‑M2/2‑5 (MQ=255) gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACCCGTATCAACAAATGACCAGAACACAGATCTACAACGTAACgcgc > 2:482442/1‑149 (MQ=255) | CACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGC > NC_000913_3_bme_pgi/1209454‑1209748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |