New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi 1552071 =NA (NA)12 (0.360) 12/220 1.8 NA noncoding (1/97 nt) RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913_3_bme_pgi 1552279 = NA (NA)noncoding (31/97 nt) RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

CCATCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAA  >  NC_000913_3_bme_pgi/1551925‑1552207
                                                                                                                                                  |                                                                                                                                        
cgattacgccgtctggttacgcaataaaaaaatggcactttataaagcgccatttagaactgatgacaaacgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCg                                                                                                                                       >  4:5595‑M1/147‑150 (MQ=255)
 cATCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCgg                                                                                                                                      <  2:406482/150‑1 (MQ=255)
   tCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGAt                                                                                                                                    >  2:473979/1‑150 (MQ=255)
   tCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGAt                                                                                                                                    >  3:171682/1‑150 (MQ=255)
   tCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGAt                                                                                                                                    >  3:171691/1‑150 (MQ=255)
            gTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGa                                                                                                                           >  2:4804/1‑150 (MQ=255)
                   gAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAAc                                                                                                                         >  3:220702/1‑145 (MQ=255)
                   gAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTGTTGAACTTTAAGCTGAATATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAAc                                                                                                                         <  4:220702/145‑1 (MQ=255)
                    aaaTCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTa                                                                                                                   >  4:285099/1‑150 (MQ=255)
                      aTCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATc                                                                                                                 <  1:4804/150‑1 (MQ=255)
                         gagaAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCgg                                                                                                              >  1:340553/1‑150 (MQ=255)
                          aaaaaatggcactttataaagcgccatttagaactgatgacaaacgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                                                             <  2:89957‑M1/30‑1 (MQ=255)
                           aaatggcactttataaagcgccattcagaactgatgacaaacgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaaggctttgttcatGCCGGATGCGGCGTGAACGCCTTATCCGGCa                                                                                                            >  1:101388‑M1/120‑150 (MQ=255)
                            aaGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCg                                                                                                                                       <  1:380301/122‑1 (MQ=255)
                            aaGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCg                                                                                                                                       >  2:380301/1‑122 (MQ=255)
                                     gCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCt                                                                                                  >  2:372851/1‑150 (MQ=255)
                                      cGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCtt                                                                                                 <  1:372851/150‑1 (MQ=255)
                                      cGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGACATTTTCATATTGTAGACAACGTAGGCTTTTTTCACGCCGGATGACGGGTGAAAGCCTGCTCCGGCATGAAAACACtt                                                                                                 >  1:410719/1‑150 (MQ=21)
                                       gAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTc                                                                                                <  4:243636/150‑1 (MQ=255)
                                                 agTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATa                                                                                      <  4:177932/150‑1 (MQ=255)
                                                      tagaactgatgacaatcgcaacattgcctgatgctctactcttatcaggcctacacgtgcactgcaatctattggatttgaagggttttcatGCCGGATTCGGCGTGAACGCCTTATCCGGCATGACAACCCTTCAAATCCAATAGATTg                                                                                 >  2:409310‑M1/93‑150 (MQ=255)
                                                        aagGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCa                                                                               <  3:285099/150‑1 (MQ=255)
                                                         agGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACGACGTAGGCTTTGTTCATGCCGGATGCGGCGGGAACGCCTTATCCGGCATGAAAACCCTTCTAATTCAATCGATTGCac                                                                              >  2:412776/1‑149 (MQ=18)
                                                          gggATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCg                                                                                                                                       <  2:222621/92‑1 (MQ=255)
                                                          gggATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCg                                                                                                                                       >  1:222621/1‑92 (MQ=255)
                                                          actgatgacaaacgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGt                                                                             >  1:89957‑M1/89‑150 (MQ=255)
                                                              tataATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAAc                                                                         <  1:65256/150‑1 (MQ=255)
                                                              tataATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAAc                                                                         <  1:18727/150‑1 (MQ=255)
                                                                   tctcTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTa                                                                    >  1:225924/1‑150 (MQ=255)
                                                                     tctTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCGTCAAAACCCCTCAAATCCAATAGATTGCAGTGAACGGTTAgg                                                                  >  3:140825/1‑150 (MQ=17)
                                                                     acgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCg                                                                                                                                       >  1:432762‑M1/78‑81 (MQ=255)
                                                                     acgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCg                                                                                                                                       <  2:432762‑M1/4‑1 (MQ=255)
                                                                      ctTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGAt                                                                                                                                    >  1:226351/1‑83 (MQ=255)
                                                                      ctTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGAt                                                                                                                                    >  1:226348/1‑83 (MQ=255)
                                                                      ctTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGAt                                                                                                                                    <  2:226348/83‑1 (MQ=255)
                                                                      ctTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGAt                                                                                                                                    <  2:226351/83‑1 (MQ=255)
                                                                       ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGcc                                                                >  1:255787/1‑150 (MQ=255)
                                                                           gAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAt                                                            <  2:236666/150‑1 (MQ=255)
                                                                           gAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAt                                                            >  1:236666/1‑150 (MQ=255)
                                                                               tttAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGAtgcgc                                                        >  2:244600/1‑146 (MQ=255)
                                                                                cctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGc                                                                 >  4:7581‑M1/67‑140 (MQ=255)
                                                                                cctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGc                                                                 <  3:7581‑M1/74‑1 (MQ=255)
                                                                                     cTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgcg                                                  >  1:185383/1‑150 (MQ=35)
                                                                                        aaaaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCAt                                               >  4:90061/1‑150 (MQ=33)
                                                                                          aaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGcc                                                                                                                      <  4:186544/77‑1 (MQ=35)
                                                                                          aaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGcc                                                                                                                      >  3:186544/1‑77 (MQ=35)
                                                                                          aaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCa                                             >  3:73905/1‑150 (MQ=32)
                                                                                            tGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAgg                                           <  2:255787/150‑1 (MQ=32)
                                                                                                   gTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGcc                                                                                                                      <  2:416990/68‑1 (MQ=35)
                                                                                                   gTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGcc                                                                                                                      >  1:416990/1‑68 (MQ=35)
                                                                                                   gTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGtt                                    <  4:73905/150‑1 (MQ=32)
                                                                                                    tAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTg                                                                                 >  1:222304/1‑104 (MQ=33)
                                                                                                    tAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTg                                                                                 <  2:222304/104‑1 (MQ=33)
                                                                                                         ggCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa                                        <  1:197102/140‑1 (MQ=33)
                                                                                                         ggCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa                                        >  2:197102/1‑140 (MQ=33)
                                                                                                          acacgttcactgcaatctattggatttgaagggtgttcatGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAccc                                                                                                   <  2:408441‑M1/40‑1 (MQ=255)
                                                                                                          acacgttcactgcaatctattggatttgaagggtgttcatGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAccc                                                                                                   >  1:408441‑M1/41‑80 (MQ=255)
                                                                                                            gcCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGtc                           <  1:412776/150‑1 (MQ=31)
                                                                                                               ttcactgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCtt                                                                                                                    >  1:43053‑M1/36‑58 (MQ=255)
                                                                                                               ttcactgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCtt                                                                                                                    <  2:43053‑M1/23‑1 (MQ=255)
                                                                                                                    tgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCTTAt                                                                                                                  <  3:34982‑M1/25‑1 (MQ=255)
                                                                                                                    tgcaatctattggatttgaagggttttcatGCCGGATGCGGCGTGAACGCCTTAt                                                                                                                  >  4:34982‑M1/31‑55 (MQ=255)
                                                                                                                     atatTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTc                  <  2:340553/150‑1 (MQ=31)
                                                                                                                            aGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGgc           >  2:273551/1‑150 (MQ=34)
                                                                                                                                aaCGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTg       <  3:221029/150‑1 (MQ=37)
                                                                                                                                 aCGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGt      <  3:90061/150‑1 (MQ=38)
                                                                                                                                           tGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa  <  1:400526/144‑1 (MQ=40)
                                                                                                                                           tGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTaaaa  >  2:400526/1‑144 (MQ=39)
                                                                                                                                                atGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCtt                                                                                                 <  3:8583‑M1/42‑1 (MQ=255)
                                                                                                                                                atGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCtt                                                                                                 >  4:8583‑M1/3‑44 (MQ=255)
                                                                                                                                                atGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgc                                                   >  3:31735‑M1/3‑90 (MQ=255)
                                                                                                                                                atGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAgc                                                   <  4:31735‑M1/88‑1 (MQ=255)
                                                                                                                                                 tGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt                   <  1:227250‑M1/120‑1 (MQ=255)
                                                                                                                                                 tGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGttt                   >  2:227250‑M1/2‑121 (MQ=255)
                                                                                                                                                  GCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAccc                                                                                                   >  1:409663‑M1/1‑40 (MQ=255)
                                                                                                                                                  GCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAAccc                                                                                                   <  2:409663‑M1/40‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                        
CCATCCGCGCTGGTATCGTGAAATCGAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGAAAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAA  >  NC_000913_3_bme_pgi/1551925‑1552207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.