| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 1552071 = | NA (NA) | 12 (0.360) | 12/220 | 1.8 | NA | noncoding (1/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_bme_pgi | 1552279 = | NA (NA) | noncoding (31/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
AGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCG > NC_000913_3_bme_pgi/1552130‑1552424 | aGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCa < 3:183841/150‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCaaa < 3:277651/150‑1 (MQ=255) gATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGa < 3:116089/136‑1 (MQ=21) gATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGa > 4:116089/1‑136 (MQ=21) gCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTc < 1:35560/140‑1 (MQ=255) gCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTc > 2:35560/1‑140 (MQ=255) gcgcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCtt < 4:80157/134‑1 (MQ=255) gcgcATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCtt > 3:80157/1‑134 (MQ=255) aaactgatgacaaacgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggca < 1:227250‑M2/1‑1 (MQ=255) aaactgatgacaaacgcaacattgcctgatgcgctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggca > 2:227250‑M2/121‑121 (MQ=255) cATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAg < 2:287963/150‑1 (MQ=255) tcaGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGt > 2:401158/1‑150 (MQ=38) tCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCa > 2:6651/1‑119 (MQ=34) tCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCa < 1:6651/119‑1 (MQ=34) gctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggcAt > 3:31735‑M2/89‑90 (MQ=255) gctacgcttatcaggcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggcAt < 4:31735‑M2/2‑1 (MQ=255) cAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCAt > 2:22227/1‑150 (MQ=33) aTGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAg > 4:245950/1‑150 (MQ=32) gcTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGTCGTATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAt > 3:284537/1‑150 (MQ=17) cTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATg > 3:74467/1‑150 (MQ=32) tGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCtt < 2:103823/90‑1 (MQ=35) tGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCtt > 1:103823/1‑90 (MQ=33) gTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGtt < 3:245950/150‑1 (MQ=32) tAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTACAGTGAACGTGTAGGCCt > 2:347209/1‑122 (MQ=18) tAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTACAGTGAACGTGTAGGCCt < 1:347209/122‑1 (MQ=17) gcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAgg < 3:7581‑M2/66‑1 (MQ=255) gcctacacgttcactgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAgg > 4:7581‑M2/75‑140 (MQ=255) actgcaatctattggatttgaagggttttcatgccggataaggcgttcacgccgcatccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGt > 1:89957‑M2/63‑150 (MQ=255) caatctattggatttgaagggttgtcatgccggataaggcgttcacgccgaatccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGCACGTGTAGGCCTGATAAGAGTAGAGCATCAGGCAATGTTGCGATTGTCATCAGTTCTa > 2:409310‑M2/59‑150 (MQ=255) gTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATg < 4:74467/150‑1 (MQ=34) cAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCt < 1:401158/150‑1 (MQ=35) cAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCt > 2:291599/1‑150 (MQ=35) aCGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCttt < 1:291599/150‑1 (MQ=38) aagggttttcatgccggataaggcgttcacgccgcatccggcAt < 3:8583‑M2/2‑1 (MQ=255) aagggttttcatgccggataaggcgttcacgccgcatccggcAt > 4:8583‑M2/43‑44 (MQ=255) gggttttcatgccggataaggcgttcacgccgcatccggcATGA‑‑ACACCCTTCAAATCCAATAGATTGCAGTGAACgtgt < 2:408441‑M2/40‑1 (MQ=255) gggttttcatgccggataaggcgttcacgccgcatccggcATGA‑‑ACACCCTTCAAATCCAATAGATTGCAGTGAACgtgt > 1:408441‑M2/41‑80 (MQ=255) tCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCAtt > 1:148080/1‑150 (MQ=255) tgccggataaggcgttcacgccgcatccggcATGAACAAAGCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTGAATGGCGCTTTATAAAGTGCCAttt > 1:101388‑M2/32‑150 (MQ=255) gccggataaggcgttcacgccgcatccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCAtttttt < 2:89957‑M2/120‑1 (MQ=255) cGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTa > 3:237339/1‑150 (MQ=255) ataaggcgttcacgccgcatccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCa < 3:34982‑M2/30‑1 (MQ=255) ataaggcgttcacgccgcatccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCa > 4:34982‑M2/26‑55 (MQ=255) aaggcgttcacgccgcatccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGaa < 2:43053‑M2/35‑1 (MQ=255) aaggcgttcacgccgcatccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGaa > 1:43053‑M2/24‑58 (MQ=255) cgTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAAc < 1:22227/150‑1 (MQ=255) cggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGt < 2:432762‑M2/77‑1 (MQ=255) cggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGt > 1:432762‑M2/5‑81 (MQ=255) cggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATcg > 4:5595‑M2/5‑150 (MQ=255) | AGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTTCAAATGGCGCTGTAAAAGGCGTCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCG > NC_000913_3_bme_pgi/1552130‑1552424 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |