mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 526,800 | 0 | A | G | 36.5% | 121.2 / 73.3 | 96 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 36.2% | 135.3 / 114.0 | 105 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 34.9% | 106.7 / 86.6 | 107 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 21.9% | 164.7 / 42.7 | 107 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 192 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 1207805 | 52 (0.690) | 8 (0.120) | 8/252 | 8.2 | 12.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_bme_pgi | = 1209602 | 70 (1.050) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_bme_pgi | 3423373 = | 72 (0.960) | 7 (0.090) | 7/280 | 9.5 | 9.9% | intergenic (+179/+50) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_bme_pgi | = 4213159 | 57 (0.770) | noncoding (120/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913_3_bme_pgi | 1207790 = | 57 (0.760) | 5 (0.080) | 5/252 | 9.9 | 7.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_bme_pgi | 1209619 = | 70 (1.050) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_bme_pgi | = 2304902 | 38 (0.510) | 7 (0.090) | 6/280 | 10.1 | 15.7% | noncoding (486/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_bme_pgi | = 2304985 | NA (NA) | noncoding (569/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | = 4165550 | 82 (1.090) | 5 (0.070) | 5/266 | 10.3 | 6.2% | coding (123/858 nt) | murI | glutamate racemase |
| ? | NC_000913_3_bme_pgi | = 4165559 | 75 (1.070) | coding (132/858 nt) | murI | glutamate racemase | |||||
| * | ? | NC_000913_3_bme_pgi | 4027518 = | 111 (1.480) | 6 (0.080) | 5/270 | 10.5 | 5.6% | noncoding (197/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_bme_pgi | 4027550 = | 97 (1.360) | noncoding (229/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | = 3150670 | 45 (0.630) | 5 (0.070) | 5/270 | 10.5 | 10.0% | noncoding (117/255 nt) | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites |
| ? | NC_000913_3_bme_pgi | = 3150808 | NA (NA) | noncoding (255/255 nt) | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | |||||
| * | ? | NC_000913_3_bme_pgi | 3042440 = | 124 (1.650) | 6 (0.080) | 5/270 | 10.5 | 5.3% | noncoding (120/155 nt) | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_bme_pgi | 4027550 = | 97 (1.360) | noncoding (229/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | = 2431012 | NA (NA) | 6 (0.080) | 5/270 | 10.5 | 5.8% | noncoding (84/84 nt) | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_bme_pgi | 4027550 = | 97 (1.360) | noncoding (229/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | = 2347327 | NA (NA) | 6 (0.080) | 5/270 | 10.5 | 5.8% | noncoding (168/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913_3_bme_pgi | 4027550 = | 97 (1.360) | noncoding (229/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||