mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 31.2% | 124.5 / 73.2 | 93 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 25.0% | 206.1 / 73.9 | 92 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 24.5% | 161.0 / 74.4 | 94 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 3,214,660 | 0 | A | G | 22.1% | 141.3 / 13.2 | 68 | E538E (GAA→GAG) | rpoD | RNA polymerase, sigma 70 (sigma D) factor |
| * | NC_000913_3_bme_pgi | 526,800 | 0 | A | G | 21.3% | 191.4 / 46.2 | 89 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 225,467 | 1 | . | T | 20.0% | 30.1 / 13.9 | 20 | intergenic (+10/‑33) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| Marginal new junction evidence (lowest skew 10 of 67 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 1207805 | 34 (0.570) | 17 (0.320) | 15/256 | 4.0 | 35.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_bme_pgi | = 1209602 | 33 (0.620) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_bme_pgi | 1207790 = | 39 (0.650) | 13 (0.250) | 12/256 | 4.9 | 27.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_bme_pgi | 1209619 = | 35 (0.660) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_bme_pgi | = 3944978 | NA (NA) | 17 (0.300) | 11/276 | 5.8 | 38.0% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4038811 | 29 (0.490) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_bme_pgi | 2727891 = | NA (NA) | 17 (0.300) | 11/276 | 5.8 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_bme_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 227052 | 33 (0.550) | 17 (0.300) | 11/276 | 5.8 | 35.0% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_bme_pgi | 3493758 = | NA (NA) | 10 (0.180) | 7/272 | 7.4 | NA | noncoding (1/26 nt) | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_bme_pgi | 3493784 = | NA (NA) | intergenic (+35/‑227) | tsgA/nirB | putative transporter/nitrite reductase, large subunit, NAD(P)H‑binding | |||||
| * | ? | NC_000913_3_bme_pgi | = 948771 | 57 (0.960) | 7 (0.120) | 7/274 | 7.4 | 11.0% | coding (798/909 nt) | ycaN | LysR family putative transcriptional regulator |
| ? | NC_000913_3_bme_pgi | = 948793 | 59 (1.040) | coding (776/909 nt) | ycaN | LysR family putative transcriptional regulator | |||||
| * | ? | NC_000913_3_bme_pgi | = 4038798 | 37 (0.620) | 7 (0.120) | 7/276 | 7.5 | 17.8% | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| ? | NC_000913_3_bme_pgi | = 4038805 | 29 (0.510) | noncoding (1287/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 3944991 | NA (NA) | 7 (0.120) | 7/276 | 7.5 | 16.5% | noncoding (1288/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4038798 | 37 (0.620) | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 227052 | 33 (0.550) | 7 (0.120) | 7/276 | 7.5 | 17.0% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | = 4038792 | 37 (0.650) | noncoding (1274/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||