New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	2362102 =	32 (0.910)	3 (0.090)	3/266	NT	7.7%	coding (110/783 nt)	rhmR	putative DNA‑binding transcriptional regulator for the rhm operon
	?	NC_000913_3_hsa_pgi	2362167 =	41 (1.200)					coding (45/783 nt)	rhmR	putative DNA‑binding transcriptional regulator for the rhm operon

AGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTT  >  NC_000913_3_hsa_pgi/2361954‑2362249                                                                                                                                                     |                                                                                                                                                    atttctccagtctgctggacgaggagcgggatttgatgcgcttcacaattttactccccctgagcaacgagactgattccagtatctaagactggaatccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgata                                                                                                                                                     <  1:624297‑M1/1‑1 (MQ=255)         cccGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAt                                                                                                                                             <  1:60514/149‑1 (MQ=255)         cccGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAt                                                                                                                                             <  1:495207/149‑1 (MQ=255)                         gCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTCTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGAtcgtcg                                                                                                                             <  1:330423/149‑1 (MQ=255)                                  aTGACCGGAAAGCTGCAACAGCCTGGTGCACAAACAAAAATGTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCATCACTAc                                                                                                                    <  2:247207/149‑1 (MQ=255)                                      ccGGAACGCTTCGTCAGCCTGGTCAACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGCGTTCACTAAGCAGAACATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg                                                                                                                <  2:307660/149‑1 (MQ=255)                                      ccGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCGTATATGCCTTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg                                                                                                                <  2:408560/149‑1 (MQ=255)                                      ccGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg                                                                                                                <  1:636434/149‑1 (MQ=255)                                      ccGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg                                                                                                                <  2:530065/149‑1 (MQ=255)                                       cGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAgggg                                                                                                               >  1:457543/1‑149 (MQ=255)                                                ccaccaGCCTGGGCCACAAACAAAAATTTTTCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCgg                                                                                                      <  2:19204/149‑1 (MQ=255)                                                 caccaGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGCGCCAATGCggg                                                                                                     >  1:141095/1‑149 (MQ=255)                                                  accaGCCTGGTCCACAACCAAAATTTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGc                                                                                                    <  1:401514/149‑1 (MQ=255)                                                    caGGCTGGTACACAAACAACAACTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCaa                                                                                                  <  1:73916/149‑1 (MQ=255)                                                            tCCACAAACAAAAATTTTCCTGGTGGTCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAGTAGGCCGTGCTTTTAGGGCTTCCCAATGTGTCAATGATCGTCGCAGGACTACAGGCGCCCCGGCGGACAATCAAAtta                                                                                          >  1:111982/1‑148 (MQ=255)                                                              cacaAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAACAAATAGGCCGTGCTTTTAGGGATTCCGAATGTGTCAAGGATCGTCGCAGAATTACAGGGGCCAATGCGGGCAATCAAATTgag                                                                                        >  2:361172/1‑149 (MQ=255)                                                                   acaaaAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGCatat                                                                                   >  1:209042/1‑149 (MQ=255)                                                                    caaaAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATc                                                                                  <  1:205966/149‑1 (MQ=255)                                                                          ttttCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGc                                                                            <  2:485707/149‑1 (MQ=255)                                                                          ttttCCTGGTGACCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGc                                                                            <  1:127914/149‑1 (MQ=255)                                                                               cTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAAGAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGAACTACAGGGGCCAATGAGGGCAATCAAATTGAGAATATCAATAGCCCgga                                                                       >  2:444798/1‑147 (MQ=255)                                                                                tGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCgtgt                                                                      >  1:476067/1‑149 (MQ=255)                                                                                tGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCGCTTAGGAATTCCCAATGTGTCAATGATCGTCGCAGCACTCCAGGGGCCAATGCGGGCAATCAAATTGACAACCTCAATACCCCgtat                                                                      >  2:108400/1‑147 (MQ=255)                                                                                     tctaagactggagtccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAatat                                                                                   <  2:171546‑M1/67‑1 (MQ=255)                                                                                     tctaagactggagtccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAatat                                                                                   >  1:171546‑M1/65‑131 (MQ=255)                                                                                     aTCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAggg                                                                 >  2:621323/1‑149 (MQ=255)                                                                                     aTCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAggg                                                                 >  2:195953/1‑149 (MQ=255)                                                                                      tCAAGGCTAAGAAAGCGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGGGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGc                                                                <  1:114707/149‑1 (MQ=255)                                                                                                   aaCGCTTACGGCTGAGGTCATTAAACATCAATTAGGCCGTGATTTTAGGGATTCCAAATGTGTCAATAATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCtt                                                   <  2:305599/149‑1 (MQ=255)                                                                                                        tGACGGCTGGCTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCCCTACAGGGGCCAATGCGGGCACTCAAATTGAGAATATCAATAGCCCGGGTCAGGGCGGGAACTTTGCTTGATTc                                              <  2:226983/149‑1 (MQ=255)                                                                                                            gCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAAc                                          >  1:362885/1‑149 (MQ=255)                                                                                                            gCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAAc                                          >  1:31209/1‑149 (MQ=255)                                                                                                               tGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATa                                       <  2:650587/149‑1 (MQ=255)                                                                                                                  gTTCATGAAGCGGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTg                                    <  2:521203/149‑1 (MQ=255)                                                                                                                    tcatcaAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGa                                  <  1:175808/149‑1 (MQ=255)                                                                                                                        aagttcccgccctgacacgggctcttgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAGTTGCGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGCCTcc                              <  2:615057‑M1/120‑1 (MQ=255)                                                                                                                                                   ggATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTATTAGCTACTGGAATCAGTCTCGt   >  2:518915/1‑149 (MQ=255)                                                                                                                                                    gATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAAGAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTTTCGtt  >  1:285397/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTT  >  NC_000913_3_hsa_pgi/2361954‑2362249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.