New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	2362102 =	32 (0.910)	3 (0.090)	3/266	NT	7.7%	coding (110/783 nt)	rhmR	putative DNA‑binding transcriptional regulator for the rhm operon
	?	NC_000913_3_hsa_pgi	2362167 =	41 (1.200)					coding (45/783 nt)	rhmR	putative DNA‑binding transcriptional regulator for the rhm operon

ACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATT  >  NC_000913_3_hsa_pgi/2362020‑2362315                                                                                                                                                    |                                                                                                                                                     acaaaAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGCatat                                                                                                                                                     >  1:209042/1‑149 (MQ=255)  caaaAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATc                                                                                                                                                    <  1:205966/149‑1 (MQ=255)        ttttCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGc                                                                                                                                              <  2:485707/149‑1 (MQ=255)        ttttCCTGGTGACCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGc                                                                                                                                              <  1:127914/149‑1 (MQ=255)             cTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAAGAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGAACTACAGGGGCCAATGAGGGCAATCAAATTGAGAATATCAATAGCCCgga                                                                                                                                         >  2:444798/1‑147 (MQ=255)              tGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCgtgt                                                                                                                                        >  1:476067/1‑149 (MQ=255)              tGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCGCTTAGGAATTCCCAATGTGTCAATGATCGTCGCAGCACTCCAGGGGCCAATGCGGGCAATCAAATTGACAACCTCAATACCCCgtat                                                                                                                                        >  2:108400/1‑147 (MQ=255)                   tctaagactggagtccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAatat                                                                                                                                                     <  2:171546‑M1/67‑1 (MQ=255)                   tctaagactggagtccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAatat                                                                                                                                                     >  1:171546‑M1/65‑131 (MQ=255)                   aTCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAggg                                                                                                                                   >  2:621323/1‑149 (MQ=255)                   aTCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAggg                                                                                                                                   >  2:195953/1‑149 (MQ=255)                    tCAAGGCTAAGAAAGCGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGGGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGc                                                                                                                                  <  1:114707/149‑1 (MQ=255)                            ggaggccagtatgttggaatcaagcaaagttcccgccctgacacgggctattgatattcgcaacttgattgcccgcattggcccctgtagtgctgcgacgatcattgacacattgggaatATCAAGAGCCCGTGTCAGGGCGGGAACtt                                                                                                                          <  2:615057‑M2/29‑1 (MQ=255)                                 aaCGCTTACGGCTGAGGTCATTAAACATCAATTAGGCCGTGATTTTAGGGATTCCAAATGTGTCAATAATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCtt                                                                                                                     <  2:305599/149‑1 (MQ=255)                                      tGACGGCTGGCTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCCCTACAGGGGCCAATGCGGGCACTCAAATTGAGAATATCAATAGCCCGGGTCAGGGCGGGAACTTTGCTTGATTc                                                                                                                <  2:226983/149‑1 (MQ=255)                                          gCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAAc                                                                                                            >  1:31209/1‑149 (MQ=255)                                          gCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAAc                                                                                                            >  1:362885/1‑149 (MQ=255)                                             tGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATa                                                                                                         <  2:650587/149‑1 (MQ=255)                                                gTTCATGAAGCGGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTg                                                                                                      <  2:521203/149‑1 (MQ=255)                                                  tcatcaAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGa                                                                                                    <  1:175808/149‑1 (MQ=255)                                                      aagttcccgccctgacacgggctcttgatATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAGTTGCGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGCCTcc                                                                                                <  2:615057‑M1/120‑1 (MQ=255)                                                                                 ggATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTATTAGCTACTGGAATCAGTCTCGt                                                                     >  2:518915/1‑149 (MQ=255)                                                                                 atattctcaatttgattgcccgcattggcccctgtagtgctgcgacgatcattgacacattgggaatATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGa                                                                                       <  2:171546‑M2/64‑1 (MQ=255)                                                                                 atattctcaatttgattgcccgcattggcccctgtagtgctgcgacgatcattgacacattgggaatATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGa                                                                                       >  1:171546‑M2/68‑131 (MQ=255)                                                                                  gATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAAGAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTTTCGtt                                                                    >  1:285397/1‑149 (MQ=255)                                                                                      CCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCCCGTTGCTc                                                                <  2:651067‑M1/149‑1 (MQ=255)                                                                                        cAATGTGTCAATGATCGTCGCAGCACTTCAGGGGCCAATGCGCGCAATCAAATTGAGAATATCCATAGCCAGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGAACTTCAGCCTTCGATACTGGAATCAGTCTCGTTTCTCAg                                                              >  2:96364/1‑149 (MQ=255)                                                                                        cAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGGTACTGGAATCAGTCTCGTTGCTCAg                                                              >  1:31771/1‑149 (MQ=255)                                                                                        cAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAg                                                              >  1:515610/1‑149 (MQ=255)                                                                                         aaTGTGGCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAgg                                                             <  1:376307/149‑1 (MQ=255)                                                                                          aTGTGTCACTTATCGTCCCAGCAACACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATTGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAggg                                                            <  1:214864/149‑1 (MQ=255)                                                                                               tCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCCCAGGGGGaat                                                       >  2:190229/1‑147 (MQ=255)                                                                                                  aTGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGACAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATGAGTCTCGTTGCTCAGGGGGAGTaaa                                                    >  1:601278/1‑149 (MQ=255)                                                                                                    gATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGGACTTTGCTTGATTCCAACATACTGGACTCAAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTaaact                                                  >  1:178399/1‑147 (MQ=255)                                                                                                     aTCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAAtt                                                 <  1:353421/149‑1 (MQ=255)                                                                                                       cgtcgCAGCACTAAAGGGGCAAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATtgt                                               <  2:398160/149‑1 (MQ=255)                                                                                                          cgaagcaCTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAAACAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGaa                                            <  2:525429/146‑1 (MQ=255)                                                                                                                  tACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAACCGCATCa                                    >  2:384012/1‑149 (MQ=255)                                                                                                                      ggggCCAATGCGGGCAATCAAATTGAGAATCTCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAATc                                <  1:573218/149‑1 (MQ=255)                                                                                                                      ggggCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAATc                                >  1:133706/1‑149 (MQ=255)                                                                                                                         gCCAATGCGGGCAATCAAATTGAGAAGATCAATAGCCCGAGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTAGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAAtaacg                             >  2:127268/1‑145 (MQ=255)                                                                                                                         gCCAAAGCGGGCAATCAAAATGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACGGGAATCACTCTCGTTGCTCAGGGGGAGTAAAACTGTGAAGCGCATCAAATCCCg                             <  2:83417/149‑1 (MQ=255)                                                                                                                         cacactGCGGCCAATCAAATTTAGAATACCAATAGCCCGCCTCAGTGCGGGAACGTTGCTTGATTCCAACATACTGGACTCCATTCTTAGATACTTGAATCACTCTCGTTGCTCAGTGGCAGTAAAATTGTGAAGCGCATCAAATCCCg                             <  2:83359/144‑1 (MQ=255)                                                                                                                            aaTGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAATCCCGcta                          >  1:47468/1‑148 (MQ=255)                                                                                                                                  ggCAATCAACTTGAGAAAATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCATGCGGAGTAAAATTGTGAAGAGCATCAAATCCCGCTCCTCgcc                    >  2:33151/1‑147 (MQ=255)                                                                                                                                  ggCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAATCCCGCTCCTCGTc                    >  1:248178/1‑149 (MQ=255)                                                                                                                                  ggCAAGTAAATTGAGAAGATCAATAGCGCGTGGCAGGGCGGGAACTTGGCTTGATTCCAACAGACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAATCCCGCTCCTCGTc                    <  2:528898/149‑1 (MQ=255)                                                                                                                                   gCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAATCCCGCTCCTCGTcc                   >  1:364781/1‑149 (MQ=255)                                                                                                                                         aaaTTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGa             >  1:337750/1‑149 (MQ=255)                                                                                                                                         aaaTTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGa             <  1:470901/149‑1 (MQ=255)                                                                                                                                           aTTGAGAATATCAATAGCCCGGGTCAGGGCGGGAACTTTGCTTGATTGCAACATACTGGACTCCAGACTTAGATACTGGAATCAGTCTCGTTGCTCATGGGGAGTAAAATTGTCAAACGCATCAACTCCCGCTCCTCGTCcagccaaca           >  2:555456/1‑144 (MQ=255)                                                                                                                                              gagaATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAGAATTGTGAAGCGCATCAAATCCCGCTCCGCGTCCAGCAGCCTGga        >  2:404228/1‑149 (MQ=255)                                                                                                                                                   tATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGATTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAAt   <  1:624297‑M2/148‑1 (MQ=255)                                                                                                                                                    atCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCCGGGGGAGTAAAACTGTGAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAAtc  >  1:144127/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                     ACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCAAATTGAGAATATCAATAGCCCGTGTCAGGGCGGGAACTTTGCTTGATTCCAACATACTGGACTCCAGTCTTAGATACTGGAATCAGTCTCGTTGCTCAGGGGGAGTAAAATTGTGAAGCGCATCAAATCCCGCTCCTCGTCCAGCAGACTGGAGAAATT  >  NC_000913_3_hsa_pgi/2362020‑2362315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.