| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 4249767 = | 413 (10.230) | 13 (0.340) | 9/266 | 3.1 | 3.1% | intergenic (+33/‑196) | malM/yjbI | maltose regulon periplasmic protein/pseudogene, SopA‑related, pentapeptide repeats‑containing |
| ? | NC_000913_3_pae_pgi | 4249787 = | 413 (10.690) | intergenic (+53/‑176) | malM/yjbI | maltose regulon periplasmic protein/pseudogene, SopA‑related, pentapeptide repeats‑containing | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCTGAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/4249920‑4249767‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaccTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCAGGT > NC_000913_3_pae_pgi/4249787‑4249934 CCTGAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGAC > 2:605487/1‑149CCTGAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGAC > 1:351645/1‑149CCTGAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGAC > 2:389584/1‑149CCTGAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGAC > 1:418040/1‑149 CTGAATGTCGAGAAACTAACAGCGAAAGGAAAAGGATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGAGAGTAACTATAAAAAATCGCGCCTGTCCCTGGAAGGAAGCATAAAAAAAGGTCAGCCAGGAGACG > 2:571512/1‑149 CTGAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACG > 1:215832/1‑149 CTGAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACG > 1:481773/1‑149 TGAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACGC > 1:613624/1‑149 TGAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACGC < 1:51401/149‑1 GAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACGCA > 2:578789/1‑149 GAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGATCCGCCAGGAGACGCA > 2:304472/1‑149 AATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACGCAC < 1:609759/149‑1 AATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACGCAC > 1:501238/1‑149 AGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCATGAGACGC < 2:374805/140‑1 AGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACGC > 1:374805/1‑140 AAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACG < 2:219439/125‑1 AAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACG > 1:219439/1‑125 TCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACGCAC < 1:353270/86‑1 TCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACGCAC > 2:353270/1‑86 TCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTTTAGTAACTCACTTCTTCTTCACTACGAATATCCATTATCTCTATGCCTTCTCACAGATTt > 2:485718/1‑148 AAAAAAGGTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCT > 1:209761/1‑149 AAAAAGGTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCCCCGGTAGTGTCTG > 2:40613/1‑149 AAAAAGGTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGAACTGAGCGATTTTTTATAGTTAATAACTTCTTCTTCACTAAGAATCTCCATTATCTCAATTCCTTATCAGGTATACTTTTCCTTTCGCCGGTAGTGattg > 2:366344/1‑145 AAAGGTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGA > 1:541005/1‑149 AAAGGTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGGGTCTGGA > 1:311815/1‑149 AGGTGCGCCAGGCGACACGCCTGGTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATCTCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGTACA > 2:626978/1‑149 AGGTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAA > 1:144877/1‑67 AGGTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAA < 2:144877/67‑1 GGTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTAGCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGTACAT > 2:680975/1‑149 GTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGGGATTCTTTTCCTTTCGCCGGTAGTGTCTGGAattg > 1:9651/1‑145 GTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCT > 2:134045/1‑99 GTGCGCCAGGAGACGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCT < 1:134045/99‑1 GCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCC > 1:81094/1‑149 GCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCC < 2:335830/149‑1 GCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTACCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCC < 1:472610/149‑1 cgCCTTTTTTTATGCTTCCTTCGTGCGATATGAGCGATTTATTATAGTAACTGACTCTTTCCTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCA < 1:424198/147‑1 cagCTTTTTTTATGCTTCCTTCCTGGGCTATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCA < 1:203476/146‑1 CACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCA > 1:243131/1‑149 CACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCA > 1:573927/1‑149 CACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCA > 1:28789/1‑149 CACCTTTTTTTATGCTTCCGTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCA < 2:557463/149‑1 ACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCAG < 1:720723/149‑1 CCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAGTATCCATTATCCCAATGCCTTATCAGAGATTGTTTTCCTGTCGCCGGTAGTGTCTGGACAGTCAGGCTACTTTTaaagg > 1:549521/1‑144 CTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCAGGT > 1:338543/1‑149 CTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCAGGT > 1:559473/1‑149 CTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCAGGT > 1:125551/1‑149 CTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTC < 2:186219/144‑1 CTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTC > 1:186219/1‑144 CTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGATACTTTTCCAGGT > 1:700513/1‑149 CTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTACTATTGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCAGGT > 1:673178/1‑149 CCTGAATGTCCAGACACTACCGGCGAAAGGAAAAGAATCTCTGATAAGGCATTGAGATAATGGATATTCTTAGTGAAGAAGAAGTGAGTTACTATAAAAAATCGCTCATATCCCAGGAAGGAAGCATAAAAAAAGGTGCGCCAGGAGACGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/4249920‑4249767‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaccTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGACATTCAGGCTACTTTTCCAGGT > NC_000913_3_pae_pgi/4249787‑4249934 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |