New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 4249767 =413 (10.230)13 (0.340) 9/266 3.1 3.1% intergenic (+33/‑196) malM/yjbI maltose regulon periplasmic protein/pseudogene, SopA‑related, pentapeptide repeats‑containing
?NC_000913_3_pae_pgi 4249787 = 413 (10.690)intergenic (+53/‑176) malM/yjbI maltose regulon periplasmic protein/pseudogene, SopA‑related, pentapeptide repeats‑containing
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 413 total aligned reads displayed.

ACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGA  >  NC_000913_3_pae_pgi/4249619‑4249912
                                                                                                                                                    |                                                                                                                                                 
aCGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTg                                                                                                                                                   >  2:388862/1‑149 (MQ=255)
 cGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTgg                                                                                                                                                  <  1:58450/149‑1 (MQ=255)
  gCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGt                                                                                                                                                 <  1:578786/149‑1 (MQ=255)
    tggcgcgAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGc                                                                                                                                               <  2:591550/146‑1 (MQ=255)
    tGTCGCTAAAGGTGATGTTGATAAGGCGTCAAACCGGCTCGATGAAGCTGAACGCCTGGAATCGACATCTGCCCAATACACCATAATCAGCAGTCTAAAGGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGc                                                                                                                                               <  2:266773/149‑1 (MQ=255)
      tCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGt                                                                                                                                             <  1:394804/149‑1 (MQ=255)
            aaGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGAAACAACTGGTGAGTCTCCTg                                                                                                                                       >  2:584992/1‑149 (MQ=255)
            aaGGTGATGGTGATAAGGCGTTAAAACTGCTTGATGAAGCTGCACGCCTGGGATCGACATCTGCCCGTTCCACCTATGTTGGCAGCGCAACATGCGATGCGTCATAGCTTCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTg                                                                                                                                       <  2:516607/149‑1 (MQ=255)
             aGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCAACAGTGATGCCTCTGCAACAACTGGTGCGCCTCCTgg                                                                                                                                      >  2:720723/1‑149 (MQ=255)
              ggTGATGTTGATATGGCGTTTAAACTGCTTGATGAAGGTGAACGGCTGGGATCGAAATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACCGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGgc                                                                                                                                     <  2:239778/149‑1 (MQ=255)
              ggTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGgc                                                                                                                                     >  1:308125/1‑149 (MQ=255)
               gTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGgcg                                                                                                                                    >  2:126056/1‑149 (MQ=255)
                   tGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCAcc                                                                                                                                >  1:86864/1‑149 (MQ=255)
                    gTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCt                                                                                                                               >  2:169760/1‑149 (MQ=255)
                    gTTGATAAGGAGTTAAACCTGCTTAATCAAGACGAACCACCGAAATCGACAGCCCCCCGTACCACCTGTATCAGCAGAGTAAAAGGCAAGGAGTAATTACGCCCCACAGTGCGGATTTTGCAACAACTGATGCGACTCCTGGCGCACCt                                                                                                                               >  2:145792/1‑149 (MQ=255)
                        ttAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCGGTGTAAAAGGCAATGGGGAATTACGCCCCACAGTGCTGAATTTGCAACAACTGGTGCGTCGCCTGGCGCACCttttt                                                                                                                           >  2:664921/2‑149 (MQ=255)
                        aTAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCttttt                                                                                                                           <  2:700391/149‑1 (MQ=255)
                            ggCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTAt                                                                                                                       >  2:325012/1‑149 (MQ=255)
                                         cTTGATGAAGCTGCACGCCTGGTATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCAGAGTGCTGATTTTGCGACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTgg                                                                                                          <  1:634540/149‑1 (MQ=255)
                                         cTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTgg                                                                                                          >  2:473523/1‑149 (MQ=255)
                                          tctatgaAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTGTTTATGCTTCCTTCCTggg                                                                                                         <  2:343931/146‑1 (MQ=255)
                                           tgatgaAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGa                                                                                                        <  1:542343/149‑1 (MQ=255)
                                                aaGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTTATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGa                                                                                                   <  2:209977/149‑1 (MQ=255)
                                                  gCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGc                                                                                                 >  1:571826/1‑149 (MQ=255)
                                                    tGAGCGCCTGGGATCGACATCTGCCCGTTCCAGCTTTATCAGCAGTGTAAAAGGAAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGa                                                                                               <  2:27590/149‑1 (MQ=255)
                                                      aaCGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCGGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGAtt                                                                                             >  1:644776/1‑149 (MQ=255)
                                                       aCGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGAttt                                                                                            <  2:182503/149‑1 (MQ=255)
                                                           gggggATCGACATCTGCGTGTTGCCCGTTTATAAGCAGTGTAAAGGGGAAGGGGTAAGTACGCCCCACAGTGCTGATTTTGCGACAACGGGTGCGTCTCCTGGCGCACCTTTTTGTATGCTTCCTTCCTGGGATATGAGCGATTTTTta                                                                                        <  2:637212/147‑1 (MQ=255)
                                                           ctaggATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTta                                                                                        <  1:373958/146‑1 (MQ=255)
                                                           cTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTta                                                                                        <  2:621287/149‑1 (MQ=255)
                                                            tGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGGTATGAGCGATTTTTtat                                                                                       >  2:605049/1‑149 (MQ=255)
                                                            tGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGTtttttttt                                                                                       >  1:258258/1‑147 (MQ=255)
                                                            tGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTtat                                                                                       >  2:538361/1‑149 (MQ=255)
                                                             gggATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTtata                                                                                      <  1:295355/149‑1 (MQ=255)
                                                               gATCAACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGCGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGt                                                                                    >  2:550236/1‑149 (MQ=255)
                                                                aTCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTa                                                                                   >  1:384445/1‑149 (MQ=255)
                                                                 tCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGAtttttt                                                                                         <  2:232549/142‑1 (MQ=255)
                                                                 tCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTaa                                                                                  <  1:4230/149‑1 (MQ=255)
                                                                 tCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTaa                                                                                  <  1:271179/149‑1 (MQ=255)
                                                                    aCATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTc                                                                               >  2:393896/1‑149 (MQ=255)
                                                                         tGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTta                                                                                        <  2:162081/135‑1 (MQ=255)
                                                                           cccGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTtccttcct                                                                                                            <  2:446191/113‑1 (MQ=255)
                                                                           cccGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGCTATGAGCGATTTTTTTTAGTAACTCTcttatt                                                                        >  2:565534/1‑149 (MQ=255)
                                                                           cccGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTaa                                                                                  >  1:366197/1‑139 (MQ=255)
                                                                              gTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCTTGGGATATGAGCGATTTGTTATAGTAACTCActtcttctt                                                                     >  2:496986/1‑149 (MQ=255)
                                                                              gTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtcttctt                                                                     <  1:442280/149‑1 (MQ=255)
                                                                              gTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtcttctt                                                                     >  1:102523/1‑149 (MQ=255)
                                                                               ttCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACttcttcttc                                                                    >  2:220391/1‑149 (MQ=255)
                                                                                   aCCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACATTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTa                                                                <  2:310179/149‑1 (MQ=255)
                                                                                    ccTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTCTTTACAACTTTATCCGGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTaa                                                               >  1:500174/1‑149 (MQ=255)
                                                                                     cTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGTTGTTGCAACAACTGGTGCGTCTCCGGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAg                                                              <  1:528267/149‑1 (MQ=255)
                                                                                     cTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAg                                                              >  2:412855/1‑149 (MQ=255)
                                                                                         aTCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGActa                                                          >  1:470376/1‑149 (MQ=255)
                                                                                           tagcagTGTAAAAGGCAAGCGGTAATTACGCCCCACAGTTCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATc                                                        <  2:615117/148‑1 (MQ=255)
                                                                                            agcagTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATcc                                                       >  1:495321/1‑149 (MQ=255)
                                                                                            agcagTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATcc                                                       >  1:346659/1‑149 (MQ=255)
                                                                                              cagTGTAAAAGGCAAGGGGTAATTACTCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCAt                                                     <  2:529793/149‑1 (MQ=255)
                                                                                              cagTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCa                                                                              >  1:292390/1‑124 (MQ=255)
                                                                                              cagTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCATTTTTTCTTCACTAAAAAAATACAt                                                     >  1:48607/1‑149 (MQ=255)
                                                                                              cagTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCAt                                                     >  1:144695/1‑149 (MQ=255)
                                                                                              cagTGGAAAAGGCAAGGGGTAATTACGGCCGACAGTGGTGATTTTTTCACAAGTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGGGATTTGTTATAGGAACTCACTTCTGCTTCACTAAGAATAGCCAt                                                     <  2:357655/149‑1 (MQ=255)
                                                                                              cagGGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACCGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTGCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCAt                                                     <  1:19105/149‑1 (MQ=255)
                                                                                               agTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATcc                                                       <  2:215135/146‑1 (MQ=255)
                                                                                                 tgtAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGc                                                                                                                     >  2:436179/1‑82 (MQ=255)
                                                                                                     aaaGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTCGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCa                                              >  2:374583/1‑149 (MQ=255)
                                                                                                       aGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAAt                                            <  1:563188/149‑1 (MQ=255)
                                                                                                         gCAAGGGGTAATTACGTCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGc                                          <  1:53412/149‑1 (MQ=255)
                                                                                                          cAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTACTGGATGTCCTTTGTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGcc                                         <  1:169760/149‑1 (MQ=255)
                                                                                                           aaGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCt                                        <  1:208361/149‑1 (MQ=255)
                                                                                                            aGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCtt                                       <  2:153267/149‑1 (MQ=255)
                                                                                                              gggTAATTACGCCCCACCGTTCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAGCTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTAt                                     <  2:202182/149‑1 (MQ=255)
                                                                                                               ggTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGAtttt                                                                                           >  2:692916/1‑94 (MQ=255)
                                                                                                               ggTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTGAGAATATCCATTATCTCAATGCCTTATc                                    <  1:454254/149‑1 (MQ=255)
                                                                                                                gTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCa                                   >  1:282744/1‑149 (MQ=255)
                                                                                                                gTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCa                                   >  2:423478/1‑149 (MQ=255)
                                                                                                                gTAACTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCa                                   <  1:520000/149‑1 (MQ=255)
                                                                                                                  aaTTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCaga                                 <  1:692215/149‑1 (MQ=255)
                                                                                                                  aaTTACGCCCCACAGTGCTGATTCTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGAATTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCaga                                 <  1:608504/149‑1 (MQ=255)
                                                                                                                   aTTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTtat                                                                                       >  2:458731/1‑94 (MQ=255)
                                                                                                                    ttACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTgg                                                                                                          >  1:698112/1‑74 (MQ=255)
                                                                                                                    ttACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAgaga                               <  1:2212/149‑1 (MQ=255)
                                                                                                                    ttACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAgaga                               <  1:3222/149‑1 (MQ=255)
                                                                                                                    ttACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAgaga                               >  1:604889/1‑149 (MQ=255)
                                                                                                                    ttACGCCCCAAAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAgaga                               <  2:452953/149‑1 (MQ=255)
                                                                                                                          cccACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCttt                         <  2:405723/149‑1 (MQ=255)
                                                                                                                                 tGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAgaga                               >  2:554498/1‑136 (MQ=255)
                                                                                                                                 tGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAgaga                               <  1:554498/136‑1 (MQ=255)
                                                                                                                                   cTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTTTCAGAGATTCTTTTCCTTTCGc                >  1:679603/1‑149 (MQ=255)
                                                                                                                                     gATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGt                                                                                    >  2:521952/1‑79 (MQ=255)
                                                                                                                                     gATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCg              >  1:404115/1‑149 (MQ=255)
                                                                                                                                      aTTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtc                                                                          <  2:293481/88‑1 (MQ=255)
                                                                                                                                        tttGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTa           <  2:102523/149‑1 (MQ=255)
                                                                                                                                        tttGCAACAACTGGTGCGTCTCCTGGCCCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTa           <  1:159291/149‑1 (MQ=255)
                                                                                                                                            caacaaCTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAgt         <  2:576644/147‑1 (MQ=255)
                                                                                                                                             aacaacTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCa                                                                   >  2:305797/1‑88 (MQ=255)
                                                                                                                                             aacaacTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCttt                         <  1:235972/130‑1 (MQ=255)
                                                                                                                                              acaacTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCt     >  2:510077/1‑149 (MQ=255)
                                                                                                                                                 acTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtctt                                                                        >  2:111251/1‑79 (MQ=255)
                                                                                                                                                 acTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCActtctt                                                                        <  1:111251/79‑1 (MQ=255)
                                                                                                                                                   tGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTc                            >  1:413093/1‑121 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
ACGCTGTCGCGAAAGGTGATGTTGATAAGGCGTTAAAACTGCTTGATGAAGCTGAACGCCTGGGATCGACATCTGCCCGTTCCACCTTTATCAGCAGTGTAAAAGGCAAGGGGTAATTACGCCCCACAGTGCTGATTTTGCAACAACTGGTGCGTCTCCTGGCGCACCTTTTTTTATGCTTCCTTCCTGGGATATGAGCGATTTTTTATAGTAACTCACTTCTTCTTCACTAAGAATATCCATTATCTCAATGCCTTATCAGAGATTCTTTTCCTTTCGCCGGTAGTGTCTGGA  >  NC_000913_3_pae_pgi/4249619‑4249912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.