New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 4244358 =NA (NA)17 (0.450) 10/258 2.7 NA noncoding (7/126 nt) REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913_3_pae_pgi 4244384 = NA (NA)noncoding (33/126 nt) REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences

Only 100 of 649 total aligned reads displayed.

GAACAGGTATTCCCCTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGA  >  NC_000913_3_pae_pgi/4244210‑4244504
                                                                                                                                                    |                                                                                                                                                  
gAACAGGTATTCCCCTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGAc                                                                                                                                                    >  2:185085/1‑149 (MQ=255)
gAACAGGTATTCCCCTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCAGGGAc                                                                                                                                                    >  1:348270/1‑149 (MQ=255)
 gatgaagccctgaaagacgcgcagactcgtatcaccaagtaatgctgtgaaatgccggatgcggcgtgaacgccttgtccggcctacaaaaccgaaacgtatgtaggcctgataagacgcgtcagcgtcgcatcaggcagttgttgtCg                                                                                                                                                   >  2:15578‑M1/148‑149 (MQ=255)
  atgaagccctgaaagacgcgcagactcgtatcaccaagtaatgctgtgaaatgccggatgcggcgtgaacgccttgtccggcctacaaaaccgaaacgtatgtaggcctgataagacgcgtcagcgtcgcatcaggcagttgttgtc                                                                                                                                                    >  1:126978‑M1/147‑147 (MQ=255)
    aGGTATTCCCCTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGAt                                                                                                                                                <  1:409647/149‑1 (MQ=255)
     aagccctgaaagacgcgcagactcgtatcaccaagtaatgctgtgaaatgccggatgcggcgtgaacgccttgtccggcctacaaaaccgaaacgtatgtaggcctgataagacgcgtcagcgtcgcatcaggcagttgttgtCGGATa                                                                                                                                               <  2:340253‑M1/6‑1 (MQ=255)
      gTATTCCCCTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATaa                                                                                                                                              <  2:292050/149‑1 (MQ=255)
      gTATTCCCCTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATaa                                                                                                                                              >  1:274751/1‑149 (MQ=255)
      gTATTCCCCTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGCTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGCCGGAtca                                                                                                                                              >  1:625156/1‑147 (MQ=255)
       tATTCCCCTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAg                                                                                                                                             <  1:543428/149‑1 (MQ=255)
         ttCCCCTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGCCGGATAAGGc                                                                                                                                           >  2:105414/1‑149 (MQ=255)
         cttgaaagacgcgcagacgcgtatcaccaagtagtgctgtgaaatgccggatgaggcgggaacgcctccttcctcccacaaaaccgaaacgtatgtaggcctgataagacgcgtcagcgtcgcatcaggcagttgttgtCGGATAAGGc                                                                                                                                           >  2:443967‑M1/140‑149 (MQ=255)
            cccTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCACTCCAGGACGGATAAGGCt                                                                                                                                          <  1:305012/147‑1 (MQ=255)
            cccGTGTGCGGACATTAAAACAACAACGTAACCCACCAGGAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCttt                                                                                                                                        <  2:144741/149‑1 (MQ=255)
             ccTTGTGCGTACATTAAAACAACAAGGTAACCGACCAGCAGGTCGAGCAGACCTAGCACTGACCATTTCAGCGCGACGCTTTGCCACCAATGTTTCTGTTTAATGACATCCCTGGGGTTCTTCCTCATTCCAGGCCGGGTAAgcacttc                                                                                                                                       >  2:682072/1‑143 (MQ=255)
             ccTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTACTGACATCCATGGGGTTCTTCCTCATTCCAGGTCGGCTAAGGCTTTc                                                                                                                                       >  2:530071/1‑149 (MQ=255)
             ccTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTc                                                                                                                                       >  2:601082/1‑149 (MQ=255)
               ttGTGCGTGCATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCAc                                                                                                                                     <  1:222945/149‑1 (MQ=255)
                      tACATTAAATCAACAAGGTAACCCACCAGCAGGCCGAGCAGACCGAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTAt                                                                                                                              <  2:510189/149‑1 (MQ=255)
                       agactcgtatccccaagtaatgctgtgaaatgccggacgcggcgggaatgccttgtccggcctacaaagacgaaacgtatgtaggattcataagacgcgtcagcgtcgcatcaggcagttgttgtCGGATAAGGCTTTCACGCCTTATc                                                                                                                             >  1:172834‑M1/126‑149 (MQ=255)
                       agactcgtatcaccaagtaatgctgtgaaatgccggatgcggcgtgaacgccttgtccggcctacaaaaccgaaacgtatgtaggcctgataagacgcgtcagcgtcgcatcaggcagttgttgtCGGATAAGGCTTTCACGCCTTATc                                                                                                                             >  1:380343‑M1/126‑149 (MQ=255)
                       aCATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATc                                                                                                                             <  2:409225/149‑1 (MQ=255)
                        gactcgtatcaccaagtaatgctgtgaaatgccggatgcggcgtgaacgccttgtccggcctacaaaaccgaaacgtatgtaggcctgataagacgcgtcagcgtcgcatcaggcagttgttgtCGGATAAGGCTTTCACGCCTTATcc                                                                                                                            >  2:82484‑M1/125‑149 (MQ=255)
                         aTTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCtt                                                                                                                                         >  2:211092/1‑135 (MQ=255)
                          ttAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAgg                                                                                                                                            >  1:667712/1‑131 (MQ=255)
                          ttAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGa                                                                                                                          >  1:313436/1‑149 (MQ=255)
                          ttAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGa                                                                                                                          <  2:367276/149‑1 (MQ=255)
                          ttAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGa                                                                                                                          >  2:253350/1‑149 (MQ=255)
                               acaacaAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGTATAAGGCGTGAAAGCCTTATCCgtcctgg                                                                                                                     <  1:291834/149‑7 (MQ=255)
                                 aacaaGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGa                                                                                                                          <  2:376583/142‑1 (MQ=255)
                                 aacaaGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTAATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACaaccac                                                                                                                   >  2:637327/1‑149 (MQ=255)
                                  accaagtaatgctgtgaaatgccggatgcggcgtgaacgccttgtccggcctacaaaaccgaaacgtatgtaggcctgataagacgcgtcagcgtcgcatcaggcagttgttgtCGGATAAGGCTTTCACGCCTTATc                                                                                                                             <  1:55641‑M1/24‑1 (MQ=255)
                                      ggTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGa                                                                                                                          >  1:367096/1‑137 (MQ=255)
                                         aaCCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGAt                                                                                                           <  2:505518/149‑1 (MQ=255)
                                         aaCCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTCCCttag                                                                                                           >  2:650297/1‑146 (MQ=255)
                                            ccaccaGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCg                                                                                                        >  2:699278/1‑149 (MQ=255)
                                            ccaccaGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCg                                                                                                        >  2:433159/1‑149 (MQ=255)
                                              tgtgaaatgccggatgcggcgtgaacgccttgtccggcctacaaaaccgaaacgtatgtaggcctgataagacgcgtcagcgtcgcatcaggcagttgttgtCGGATAAGGCTTTCACGCCTTATCCGa                                                                                                                          <  2:621396‑M1/27‑1 (MQ=255)
                                                   cagGCCGAGCAGACCTAGCACTTACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCGCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGa                                                                                                 <  2:125010/149‑1 (MQ=255)
                                                        cGAGCAGACCTAGCACGGACCATTTGAGCGCGTCGCTTTGCCCTCAATGTTGCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAGGCCTTTCCCGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGt                                                                                            <  2:580706/149‑1 (MQ=255)
                                                               aCCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCa                                                                                     >  2:194483/1‑149 (MQ=255)
                                                                  tAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                  <  1:601082/149‑1 (MQ=255)
                                                                  tAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCCTTCACGCCTTATCCGACAACAAATGCCTGATGAGCCGCTGACGCTTCTTATCAggg                                                                                  >  1:109882/1‑148 (MQ=255)
                                                                    gCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCt                                                                                >  1:87930/1‑149 (MQ=255)
                                                                      aCTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAc                                                                              <  1:185085/149‑1 (MQ=255)
                                                                       cTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAGCAACTGCCTGATGGGACGCTGACGCGTCTTATCAGGCCTACa                                                                             >  2:479122/1‑149 (MQ=255)
                                                                        tGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAt                                                                            >  1:18873/1‑149 (MQ=255)
                                                                        tGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAt                                                                            >  2:562290/1‑149 (MQ=255)
                                                                         gACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCAGTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGATGACGCGTCTTATCAGGCCtccctc                                                                           >  1:141420/1‑144 (MQ=255)
                                                                          aCCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGCTGCGACGCTGACGCGTCTTATCAGGCCTACATAc                                                                          >  1:592372/1‑149 (MQ=255)
                                                                          aCCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACa                                                                             <  1:714869/146‑1 (MQ=255)
                                                                          aCCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATAc                                                                          >  1:240847/1‑149 (MQ=255)
                                                                            cATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGt                                                                        <  1:417477/149‑1 (MQ=255)
                                                                                  aGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACTTTTCGGt                                                                  >  1:117581/1‑149 (MQ=255)
                                                                                   gcgcGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAAATCCTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGtt                                                                 <  1:391267/149‑1 (MQ=255)
                                                                                    cgcgTCGCTTTGCCAACAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGttt                                                                <  1:9795/149‑1 (MQ=255)
                                                                                      cgTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGa                                                                                                                          >  1:514389/1‑89 (MQ=255)
                                                                                         cGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAg                                                           <  2:78103/149‑1 (MQ=255)
                                                                                           ttttGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGc                                                         <  1:500695/148‑1 (MQ=255)
                                                                                           cTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAg                                                           <  1:21605/147‑1 (MQ=255)
                                                                                            tttGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTTCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGcc                                                        >  1:683237/1‑149 (MQ=255)
                                                                                                ccaccaATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAgg                                                                                   >  1:637776/1‑118 (MQ=255)
                                                                                                ccaccaATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGAc                                                    >  2:242705/1‑149 (MQ=255)
                                                                                                ccaccaATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGAc                                                    <  1:153915/149‑1 (MQ=255)
                                                                                                 caccaATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACa                                                   >  1:491715/1‑149 (MQ=255)
                                                                                                  accaATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGa                                                                                                                                                 <  1:461382/54‑1 (MQ=255)
                                                                                                   ccaATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAAAAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAg                                                 >  1:619642/1‑149 (MQ=255)
                                                                                                    caATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAgg                                                >  2:465884/1‑149 (MQ=255)
                                                                                                    caATGTTTCTTTTTAACGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAgg                                                <  1:23567/149‑1 (MQ=255)
                                                                                                        gTTTCTTTTGAATGACATCCATGGGGGTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGtt                                            <  2:170393/149‑1 (MQ=255)
                                                                                                          ttCTTTTTAATGACTTCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCa                                          <  2:455967/149‑1 (MQ=255)
                                                                                                             tttttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                  <  1:25489/106‑1 (MQ=255)
                                                                                                             tttttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGGTTCGGTTTTGTAGGCCGGACAAGGCGTTCAcgc                                       >  1:444404/1‑149 (MQ=255)
                                                                                                             tttttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGATTACACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCAcgc                                       <  1:675954/149‑1 (MQ=255)
                                                                                                                  aaTGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCAt                                  >  2:539370/1‑149 (MQ=255)
                                                                                                                        aTCCCTGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCa                            <  1:7859/149‑1 (MQ=255)
                                                                                                                        aTCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCa                            <  2:631037/149‑1 (MQ=255)
                                                                                                                          ccATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCAtt                          <  2:274751/149‑1 (MQ=255)
                                                                                                                           cATGGGGTTCTTCCTCATTCCAGGACTGATAAGGCTTTCACGCCTTATCCGACAACAACTTCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGTAttt                         <  2:231604/149‑1 (MQ=255)
                                                                                                                           cATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCAttt                         >  1:476522/1‑149 (MQ=255)
                                                                                                                             tGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTca                       <  2:348270/149‑1 (MQ=255)
                                                                                                                             tGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCCCATCCGGCATTTcc                       >  2:11817/1‑148 (MQ=255)
                                                                                                                               gggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGtt                                                                       <  1:451320/99‑1 (MQ=255)
                                                                                                                                  ttcttcCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCa                  >  2:668053/1‑149 (MQ=255)
                                                                                                                                    cttcCTCATTCCAGGACGGATAAGGCTTTCACGcc                                                                                                                                  >  2:494300/1‑35 (MQ=255)
                                                                                                                                    cttcCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGGCGCTGACCCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGGTGGACAGGGCGTTCCCGCGGCATCCGGCATTTCTCAGGAtt                >  1:10003/1‑149 (MQ=255)
                                                                                                                                    cttcCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCAtt                >  2:555815/1‑149 (MQ=255)
                                                                                                                                     ttcCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTc                                                                                           <  2:39113/73‑1 (MQ=255)
                                                                                                                                        cTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACtt            >  2:32219/1‑149 (MQ=255)
                                                                                                                                         tCATTCCAGGGCGGAAAAGGTTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTAGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTg           <  2:265636/149‑1 (MQ=255)
                                                                                                                                         tCATTCCAGGACGGATAAGGCTTTCACGCCTTAGCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATAAGAAATGAGATTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTg           >  1:530752/1‑149 (MQ=37)
                                                                                                                                            ttCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTg        >  2:221474/1‑149 (MQ=255)
                                                                                                                                             tCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGa       <  1:333352/149‑1 (MQ=255)
                                                                                                                                                aGGACGGATAAGGCTTTCACTCCTTATCCGACAACAACTGCCTGATGAGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGCTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATAc    <  1:206510/149‑1 (MQ=255)
                                                                                                                                                aGGACGGATAAGGCTTTCACGCCTTGTCCGACAACAACTGCCTGATACGACGCTGACGCGTCTTATGTGGCCTACATACGTTTCCGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGGATTTCACAGCATTACTTGGTGATAc    >  1:652379/1‑149 (MQ=39)
                                                                                                                                                aGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCTACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATAc    >  1:701476/1‑149 (MQ=255)
                                                                                                                                                aGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCGTTACTTGGTGATAc    >  2:708977/1‑149 (MQ=255)
                                                                                                                                                aGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCGACATACGTTGCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATAc    >  1:572193/1‑149 (MQ=255)
                                                                                                                                                 ggACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTAATTGTTGATACg   >  1:432526/1‑149 (MQ=255)
                                                                                                                                                  gACGGATAAGTGTTGCACGCGTTAGCCGACAACAACGGCCTGAAGCGACGCTGACGCGTCTTAGCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGa  <  1:195603/149‑1 (MQ=37)
                                                                                                                                                    |                                                                                                                                                  
GAACAGGTATTCCCCTTGTGCGTACATTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGA  >  NC_000913_3_pae_pgi/4244210‑4244504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.