New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 4244358 =NA (NA)17 (0.450) 10/258 2.7 NA noncoding (7/126 nt) REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913_3_pae_pgi 4244384 = NA (NA)noncoding (33/126 nt) REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences

Only 100 of 613 total aligned reads displayed.

TTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGA  >  NC_000913_3_pae_pgi/4244236‑4244532
                                                                                                                                                    |                                                                                                                                                     
ttAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGa                                                                                                                                                       <  2:367276/149‑1 (MQ=255)
ttAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGa                                                                                                                                                       <  1:594672/149‑1 (MQ=255)
 tAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGac                                                                                                                                                      >  1:62139/1‑149 (MQ=255)
      caacaaGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGAcaacaa                                                                                                                                                 <  2:255242/149‑1 (MQ=255)
       aacaaGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGa                                                                                                                                                       >  1:376583/1‑142 (MQ=255)
            ggTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCTACAACAACTGCCt                                                                                                                                           >  2:268935/1‑149 (MQ=255)
               aaCCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTCCCttag                                                                                                                                        >  2:650297/1‑146 (MQ=255)
                atgcttggaaatgccggatgcggcgtgaacggcttgtccggcctacaaaactgaaacgtatgtaggcctgataagacgcgtcaacgtcgcatcaggcagttgttgtCTGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATg                                                                                                                                       >  2:683572‑M1/107‑149 (MQ=255)
                 cctaccaGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGc                                                                                                                                      <  1:127598/146‑1 (MQ=255)
                  ccaccaGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCg                                                                                                                                     >  1:200600/1‑149 (MQ=255)
                  ccaccaGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCGTTGCCACCAATGTTACTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGCCGGATAAGGCTTTCACGCCTTATCCGACAACCACTGCCTGATGCg                                                                                                                                     >  1:634923/1‑149 (MQ=255)
                      cagcagGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCTACAACAACTGCCTGATGCGACGc                                                                                                                                 >  1:442016/1‑149 (MQ=255)
                            gCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGAcgc                                                                                                                           >  2:635816/1‑149 (MQ=255)
                              cGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCGTGATGCGACGCTGACGCGt                                                                                                                         <  2:607685/149‑1 (MQ=255)
                              cGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGt                                                                                                                         <  2:505541/149‑1 (MQ=255)
                                 gCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATTCGACGCTGACGTGGCtt                                                                                                                      <  2:522430/149‑1 (MQ=255)
                                   aGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTAt                                                                                                                    <  1:193786/149‑1 (MQ=255)
                                   aGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTAt                                                                                                                    <  1:406095/149‑1 (MQ=255)
                                    gACCTAGAACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATc                                                                                                                   <  1:1119/149‑1 (MQ=255)
                                     aCCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCa                                                                                                                  <  2:296109/149‑1 (MQ=255)
                                       cTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAgg                                                                                                                >  1:574756/1‑149 (MQ=255)
                                       cTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAgg                                                                                                                >  1:163551/1‑149 (MQ=255)
                                        tAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                                               >  1:81281/1‑149 (MQ=255)
                                        tAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                                               <  1:276247/149‑1 (MQ=255)
                                        tAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                                               <  2:187908/149‑1 (MQ=255)
                                            aacgACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAc                                                                                                           <  2:326000/146‑1 (MQ=255)
                                            aCTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAc                                                                                                           <  1:185085/149‑1 (MQ=255)
                                              tGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGcc                                                                                                              >  2:393400/1‑144 (MQ=255)
                                               gACCATTTCAGCGCGTCGCTGTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCCCATGCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACGTCCTGAGGCGACGCTGACGCGTCTTATCAGGCCTACATa                                                                                                        <  2:498992/149‑1 (MQ=39)
                                                aCCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCtt                                                                                                                      >  1:119958/1‑134 (MQ=255)
                                                aCCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCtt                                                                                                                      <  2:119958/134‑1 (MQ=255)
                                                aCCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATAc                                                                                                       >  2:559311/1‑149 (MQ=255)
                                                aCCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGGTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATAc                                                                                                       >  1:551835/1‑149 (MQ=255)
                                                  cATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGt                                                                                                     <  1:417477/149‑1 (MQ=255)
                                                   aTTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGtt                                                                                                    >  1:340253/1‑149 (MQ=255)
                                                    tttCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATTCGttt                                                                                                   >  2:199896/1‑149 (MQ=255)
                                                    tttCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGttt                                                                                                   >  1:49529/1‑149 (MQ=255)
                                                    tttCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGttt                                                                                                   >  1:293942/1‑149 (MQ=255)
                                                             gTCGCTTCGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGACTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTga                                                                                         >  1:665661/1‑148 (MQ=255)
                                                             aaagCTTTGCCAGCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCGTGATCCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGt                                                                                         >  2:453216/4‑149 (MQ=255)
                                                              tCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTa                                                                                        <  2:27999/149‑1 (MQ=255)
                                                               cGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTTTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAg                                                                                       <  1:673255/149‑1 (MQ=255)
                                                                  tttGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAATGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGcc                                                                                    >  1:679175/1‑149 (MQ=255)
                                                                        accaATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTTTAGGCCGGCCaa                                                                              >  2:130855/1‑149 (MQ=255)
                                                                        accaATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACaa                                                                              >  1:477009/1‑149 (MQ=255)
                                                                         caaaTGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAg                                                                             <  1:465386/147‑1 (MQ=255)
                                                                               tttCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGa                                                                                                                                         >  1:508884/1‑84 (MQ=255)
                                                                                 tCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCAc                                                                     >  2:105931/1‑149 (MQ=255)
                                                                                   tttttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                                               <  1:25489/106‑1 (MQ=255)
                                                                                   tttttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTCCATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCAcgc                                                                   >  2:539343/1‑149 (MQ=255)
                                                                                    ttttAATGCCATCCATGGGGTTCTTCCCCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGACCTATTTATTGTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCAcgcc                                                                  <  1:536315/149‑1 (MQ=38)
                                                                                    ttttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCAcgcc                                                                  <  2:240847/149‑1 (MQ=255)
                                                                                         aTGACATCCATGCGTTTCTCCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATc                                                             <  2:348566/149‑1 (MQ=255)
                                                                                           gACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAATGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCCGTT‑TTGTAGGATGGACCAGACGCTCACGCCCCATCCg                                                           >  2:43352/1‑149 (MQ=37)
                                                                                           gACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCg                                                                                   <  1:245353/125‑1 (MQ=255)
                                                                                              aTCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCa                                                        <  2:631037/149‑1 (MQ=255)
                                                                                              aTCCATGGGGGTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTCCATACGTTTCGGTT‑TTGTAGGCCGGCCAAGGCGTTCACGCCGCATCCGGCa                                                        >  2:48034/1‑149 (MQ=255)
                                                                                                 cATGGGGTTCTTCCTCATTCCAGGACTGATAAGGCTTTCACGCCTTATCCGACAACAACTTCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGTAttt                                                     <  2:231604/149‑1 (MQ=255)
                                                                                                 cATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCAttt                                                     >  2:697792/1‑149 (MQ=255)
                                                                                                   tGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCGTTTca                                                   >  1:230874/1‑149 (MQ=255)
                                                                                                   tGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGCTTCGCTT‑AGGTAGGCCGTACAAGGCGTTCACGCCGCATCCGGCATTTca                                                   >  1:319665/1‑149 (MQ=38)
                                                                                                     gggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGtt                                                                                                    <  1:451320/99‑1 (MQ=255)
                                                                                                     gggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAg                                                                                       >  2:15258/1‑111 (MQ=255)
                                                                                                     gggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTcaca                                                 <  2:591170/149‑1 (MQ=255)
                                                                                                     gggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTCACCAAGCCTACTTCCG‑TTCGCTTCAGGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTcaca                                                 <  1:173061/149‑1 (MQ=37)
                                                                                                      ggTTCTTCCTCCTTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAg                                                <  1:238172/149‑1 (MQ=255)
                                                                                                       gTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGc                                               >  1:432071/1‑149 (MQ=255)
                                                                                                          cttcCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGGCGCTGACCCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGGTGGACAGGGCGTTCCCGCGGCATCCGGCATTTCTCAGGAtt                                            >  1:10003/1‑149 (MQ=255)
                                                                                                             ccTCATTCCAGGCCGGATAAGGCTTTCACGCCTTCTCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACt                                         <  2:212992/149‑1 (MQ=255)
                                                                                                              cTCATTCCAGGACGGATCACGCTTTCACGCCGTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACtt                                        <  1:705083/149‑1 (MQ=255)
                                                                                                              cTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACtt                                        >  1:308101/1‑149 (MQ=255)
                                                                                                               tCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGGTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTg                                       <  2:672622/149‑1 (MQ=255)
                                                                                                                 aTTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGCCCTACATACGTTTCGGTT‑TTGTACGCCGGACAAGGCGTTCAAGCCGCATCCGGCATTTACCAGCATTACTTGGt                                     >  2:81296/1‑149 (MQ=38)
                                                                                                                     cAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATa                                 >  1:73028/1‑149 (MQ=255)
                                                                                                                     cAGGACGGATAAGGCTTTAACGACTGATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATAGGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATa                                 <  2:340492/149‑1 (MQ=255)
                                                                                                                       ggACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTcaca                                                 <  2:175119/131‑1 (MQ=255)
                                                                                                                         tcggataaggcgtgaaagccttatccgACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAg                             >  2:216994‑M2/28‑149 (MQ=255)
                                                                                                                           ggataaggcgtgaaagccttatccgACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCa                                                                                                                  >  1:607428‑M2/26‑63 (MQ=255)
                                                                                                                           GGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTc                           <  1:91110‑M1/149‑1 (MQ=255)
                                                                                                                             ATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCgg                                                          >  1:38210‑M1/1‑116 (MQ=255)
                                                                                                                             ATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCgg                                                          <  2:38210‑M1/116‑1 (MQ=255)
                                                                                                                             ATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTGCTTGGTGATACGGGTCTg                         <  1:559545‑M1/149‑1 (MQ=255)
                                                                                                                              TAAGGCTTGCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTTACTGCATTACTTGGTGATACGAGTCTgc                        >  2:249201‑M1/1‑149 (MQ=255)
                                                                                                                               AAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCAGGGCAAGGCGGTCACGCCGCATCCGGCGTTTCACAGCATTACTTGGTGATACGAGTCTgcg                       <  1:6271‑M1/149‑1 (MQ=255)
                                                                                                                                 GGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGtt                                                                                              >  2:71011‑M1/1‑77 (MQ=255)
                                                                                                                                 GGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGcgcg                     <  1:98320‑M1/149‑1 (MQ=255)
                                                                                                                                  GCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCAcgc                                                                   <  1:520079‑M1/102‑1 (MQ=255)
                                                                                                                                    tttCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCt                  >  2:78012/1‑149 (MQ=255)
                                                                                                                                     ttCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACaa                                                                              >  2:471179/1‑88 (MQ=255)
                                                                                                                                        aCGCCTTATCCGACAACCACCGCCTGTGGCGACGCGGACGCGTCTTACCAGGCCTACCTCCGTTCCGGTT‑TTGTAGGCCGGTCAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTAGTGATACGAGTCTGCGCGTCTTTCa              <  1:651837/149‑1 (MQ=37)
                                                                                                                                        aCGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCa              <  2:416475/149‑1 (MQ=255)
                                                                                                                                          gccttatccgACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATGACTTGGTGATACGAGTCTGCGCGTCTTTCCgg            >  1:2189‑M2/11‑149 (MQ=255)
                                                                                                                                            cttatccgACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCTGCATTTCACAGCATTACTTGGTTATACGAGTCTGCGCGTCTTTCAGGGc          >  1:39185‑M2/9‑149 (MQ=255)
                                                                                                                                            cttatccgACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATAc                                >  2:621620‑M2/9‑127 (MQ=255)
                                                                                                                                                 ccgACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCAt     <  2:163551‑M2/146‑1 (MQ=255)
                                                                                                                                                 ccgACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TCGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGTTGATACGAGTCTGCGCGTCTTTCACGGCTTCAt     >  2:553221‑M2/4‑149 (MQ=255)
                                                                                                                                                  cgACAACAACTGCCTGATGCGACGCTGACGAATGCCCGGAATCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATc    >  1:359532‑M2/3‑149 (MQ=255)
                                                                                                                                                   gACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTgg                                      >  1:14448‑M2/2‑114 (MQ=255)
                                                                                                                                                   gACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCAtca   >  2:464111‑M2/2‑148 (MQ=255)
                                                                                                                                                    acaacaACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTgcgc                      <  2:577659/129‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
TTAAAACAACAAGGTAACCCACCAGCAGGCCGAGCAGACCTAGCACTGACCATTTCAGCGCGTCGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTT‑TTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGA  >  NC_000913_3_pae_pgi/4244236‑4244532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.