New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi 4248622 =NA (NA)14 (0.370) 9/264 3.0 2.8% noncoding (42/125 nt) REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913_3_pae_pgi 4248654 = 482 (12.570)noncoding (74/125 nt) REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 506 total aligned reads displayed.

CGGCAAAGCCGTTCCTGCTGATTTCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCG  >  NC_000913_3_pae_pgi/4248475‑4248768
                                                                                                                                                   |                                                                                                                                                  
  gCAAAGCCGTTCCTGCTGATTTCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCt                                                                                                                                                 >  1:552723/1‑149 (MQ=255)
    aaaGCCGGGCCTGCTGATTTCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGa                                                                                                                                               <  2:509730/149‑1 (MQ=255)
     aaGCCGTTCCTGCGGATTTCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGAt                                                                                                                                              <  2:87488/149‑1 (MQ=255)
       gCCGTTCCTGCTGATTTCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGc                                                                                                                                            >  1:584188/1‑149 (MQ=255)
       gCCGTTCCTGCTGATTTCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGc                                                                                                                                            >  1:137845/1‑149 (MQ=255)
          gTTCCTGCTGATTTCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGAc                                                                                                                                         >  2:287799/1‑149 (MQ=255)
              ctgctgATTTCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCtt                                                                                                                                     >  2:641371/1‑149 (MQ=255)
                  tgctttCAAGGGGAGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCGTCGGTGCCCAGATGCAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTgcgc                                                                                                                                 <  2:581124/146‑1 (MQ=38)
                     tttCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGGTCCGGCGCTTGCGGGTc                                                                                                                              >  1:278194/1‑149 (MQ=255)
                         aaCGGCGGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCGGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTAt                                                                                                                          <  1:641371/149‑1 (MQ=255)
                            ggcggcAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAg                                                                                                                       <  1:183989/149‑1 (MQ=255)
                                   gCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACa                                                                                                                >  2:413424/1‑149 (MQ=255)
                                     ttCGGTCGGTGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAc                                                                                                              <  2:171164/149‑1 (MQ=255)
                                        ggTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGc                                                                                                           <  1:661016/149‑1 (MQ=255)
                                        ggTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGc                                                                                                           <  1:298593/149‑1 (MQ=255)
                                        ggTCGTGGCGACAGCGACGAGTGGACCTGCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGc                                                                                                           <  1:314894/149‑1 (MQ=255)
                                         gtggTGGCGACAGCGAGGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCt                                                                                                          <  2:323768/146‑1 (MQ=255)
                                         gTCGTGGGGACAGCGACGAGTGGACCGGCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCt                                                                                                          <  2:259854/149‑1 (MQ=255)
                                           cGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGt                                                                                                        <  2:452783/149‑1 (MQ=255)
                                               gtgttaGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACACCGGCTGTCaaa                                                                                                    >  2:274363/6‑149 (MQ=255)
                                                cGAAAGCGACGGGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGTTAATAGCAAAACCTGGTCCGGATAAGTCGTTAACCCGACACCCTTCTCCCGATTCGTGTTTCGACGCTTGCGCGTCTTATCAGTCCTACAACGGCTGTCAAAt                                                                                                   <  1:356748/149‑1 (MQ=255)
                                                     gCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAgg                                                                                              >  1:435529/1‑149 (MQ=255)
                                                     gCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAgg                                                                                              >  2:477849/1‑149 (MQ=255)
                                                       gacgaGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGcc                                                                                            <  1:125309/149‑1 (MQ=255)
                                                        acgaGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCg                                                                                           <  1:11363/149‑1 (MQ=255)
                                                              ggACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAg                                                                                     >  2:122044/1‑149 (MQ=255)
                                                              ggACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAg                                                                                     <  1:702425/149‑1 (MQ=255)
                                                               gACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAgg                                                                                    >  1:232638/1‑149 (MQ=255)
                                                                aCCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGc                                                                                   <  2:340878/149‑1 (MQ=255)
                                                                 ccTTGGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCg                                                                                  <  2:313043/149‑1 (MQ=255)
                                                                 ccTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCg                                                                                  >  2:271861/1‑149 (MQ=255)
                                                                   ttCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGtt                                                                                <  1:32187/149‑1 (MQ=255)
                                                                   ttCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGtt                                                                                >  2:443708/1‑149 (MQ=255)
                                                                    tCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGttt                                                                               >  2:400474/1‑149 (MQ=255)
                                                                      ggTGCGCAGATGGTAATCTGGGGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTAc                                                                             <  2:382530/149‑1 (MQ=255)
                                                                       gTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGCTGCGGCGtaaacg                                                                            >  2:466531/1‑144 (MQ=255)
                                                                        tGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGACGTTTCcgc                                                                           >  2:499724/1‑149 (MQ=255)
                                                                               aTGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCtt                                                                                                                                     <  2:433795/84‑1 (MQ=255)
                                                                               aTGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATcc                                                                    <  1:686371/149‑1 (MQ=255)
                                                                                tGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                                                                   <  2:143872/149‑1 (MQ=255)
                                                                                tGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                                                                   <  1:146476/149‑1 (MQ=255)
                                                                                tGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCAGCCg                                                                   >  2:24643/1‑149 (MQ=255)
                                                                                  gAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGCTAAGGCGTTCACGCCCCATCCGGc                                                                 >  2:367158/1‑149 (MQ=255)
                                                                                  gAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCGTAGCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                                 <  1:466531/149‑1 (MQ=25)
                                                                                   aaaTCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                <  1:412383/149‑1 (MQ=255)
                                                                                    aaTCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGc                                                                                             >  2:78040/1‑119 (MQ=255)
                                                                                    aaTCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGc                                                                                             <  1:78040/119‑1 (MQ=255)
                                                                                      tCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACg                                                                                                             <  2:656994/101‑1 (MQ=255)
                                                                                        tggtggTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATCAGGCGTTTAGTCCGCATCCGGCATaaaa                                                           >  1:669956/1‑149 (MQ=255)
                                                                                             gtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAgg                                                      <  1:392621/149‑1 (MQ=255)
                                                                                              tAAAAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGt                                                     <  2:698226/149‑1 (MQ=255)
                                                                                                aTAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTg                                                   <  1:425171/149‑1 (MQ=255)
                                                                                                aTAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGACTGATGCGACGCTGCCGCGTCTTATCAGGCCTACAACGGCTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAACGGTTg                                                   >  1:692888/1‑149 (MQ=25)
                                                                                                  aGCAAAACCTGGGCCGGATAAGGCTTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTc                                                 <  1:47769/149‑1 (MQ=255)
                                                                                                   gCAAACCCTGGGCCGCATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGGAGGCCGGATAAGGCGTTTACGACGCCTCCGGCATAAACACAGGTTGtaa                                                >  2:419621/1‑147 (MQ=21)
                                                                                                   gCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGGCGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCAAAACAGGTTGTCa                                                >  1:23406/1‑149 (MQ=255)
                                                                                                     aaaaCCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCAtt                                              >  1:212561/1‑149 (MQ=255)
                                                                                                      aaaCCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGtt                                                    <  2:673715/142‑1 (MQ=255)
                                                                                                      aaaCCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGtt                                                    >  1:673715/1‑142 (MQ=255)
                                                                                                       aaCCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTAt                                            >  1:245714/1‑149 (MQ=255)
                                                                                                         ccggggCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCt                                          <  1:253295/146‑1 (MQ=255)
                                                                                                         ccTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCt                                          <  1:559098/149‑1 (MQ=255)
                                                                                                         ccTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCt                                          <  2:213044/149‑1 (MQ=255)
                                                                                                         ccTGGGCCGGATAAGGCGTTTACACCGCATTCGTCAACCCACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTAAAAACAGCTTGTCATTATCt                                          <  2:590819/149‑1 (MQ=25)
                                                                                                           tGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCACATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGa                                        <  2:628836/149‑1 (MQ=255)
                                                                                                             ggCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGaaa                                      <  1:105276/149‑1 (MQ=255)
                                                                                                             ggCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGaaa                                      <  1:308077/149‑1 (MQ=255)
                                                                                                             ggCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCCGTCACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGaaa                                      >  1:597364/1‑149 (MQ=255)
                                                                                                             ggCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGGCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATGATCTGgaa                                      >  1:99554/1‑149 (MQ=255)
                                                                                                              gCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAg                                     <  1:628529/149‑1 (MQ=255)
                                                                                                              gCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAAGTTGTCATTATCGGAAAg                                     >  1:377712/1‑149 (MQ=255)
                                                                                                               ccGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAgg                                    <  1:26621/149‑1 (MQ=255)
                                                                                                                cGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAggg                                   >  2:555908/1‑149 (MQ=255)
                                                                                                                 ggATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACACCGGCTGTCAAATGTAGGCCGGATAAGGCGATTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAgggg                                  >  2:354455/1‑149 (MQ=255)
                                                                                                                 ggATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAgggg                                  <  1:159468/149‑1 (MQ=255)
                                                                                                                 ggATAAGCCGTTTACGCCGCCTTCGGCAAACACCGCCTGATGCGCCGCCTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAgggg                                  <  1:336930/149‑1 (MQ=25)
                                                                                                                   aTAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGCCTGTCAAATGTAGGCAGGATAAGGCGTTTACGCCGCTTCCGGCGTAAAAACAGGTTGTCATTATCTGAAAGGGGCg                                >  1:202131/1‑149 (MQ=255)
                                                                                                                     aaGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGaa                              >  1:449828/1‑149 (MQ=255)
                                                                                                                     aaGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGaa                              >  1:89394/1‑149 (MQ=255)
                                                                                                                      aGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGaaa                             >  2:164234/1‑149 (MQ=255)
                                                                                                                      aGGCGTTGACGCCGCATTCGGCAACCAACGCCGGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGaaa                             <  2:52554/149‑1 (MQ=255)
                                                                                                                       ggCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCCTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAg                            <  2:206429/149‑1 (MQ=255)
                                                                                                                          gTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGtt                                                                                <  2:196138/94‑1 (MQ=255)
                                                                                                                          gTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGccc                         <  2:134922/149‑1 (MQ=255)
                                                                                                                                gccgcATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGa                   <  2:112140/149‑1 (MQ=255)
                                                                                                                                 ccgcATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCGTAAAAAc                                                         >  1:371243/1‑110 (MQ=255)
                                                                                                                                  cgcATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTc                                                 >  1:646912/1‑117 (MQ=255)
                                                                                                                                  cgcATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGaaa                             >  1:500610/1‑137 (MQ=255)
                                                                                                                                       tCGGAAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCgg            <  2:568232/149‑1 (MQ=255)
                                                                                                                                         ggCACCCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGTCCCTCTGATTATCGGGt          <  2:438380/149‑1 (MQ=255)
                                                                                                                                         ggCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGtt                                                                                >  1:605524/1‑79 (MQ=255)
                                                                                                                                         ggCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGtt                                                                                <  2:605524/79‑1 (MQ=255)
                                                                                                                                         ggCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTAAAATTTAGGCCGGATAAGGCGTTTAAGCCGCATCCGGCATAAAAACAGGTTGTCCTTATCTGAAAGGGACGAAAGCCCCTCTGCTTATCAGGt          >  2:29377/1‑149 (MQ=37)
                                                                                                                                          gCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGAATAATGCTTATAGACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGAtt         >  1:530547/1‑149 (MQ=37)
                                                                                                                                            aaccaacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATGCGGCGTAAAcgcctta                                                                       >  1:169478/1‑82 (MQ=21)
                                                                                                                                            aaccaacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAg                                                                                     >  1:571395/1‑71 (MQ=255)
                                                                                                                                            aaccaacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTa       >  2:541008/1‑149 (MQ=255)
                                                                                                                                               caacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGtttgggg    >  1:120813/1‑145 (MQ=255)
                                                                                                                                                aacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCaaa                                                                                                    >  2:233258/1‑52 (MQ=255)
                                                                                                                                                aacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAgcgc   <  1:29110/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CGGCAAAGCCGTTCCTGCTGATTTCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCG  >  NC_000913_3_pae_pgi/4248475‑4248768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.