New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 281903	21 (1.300)	7 (0.460)	7/236	0.9	26.6%	coding (81/1155 nt)	yagA	CP4‑6 prophage; putative DNA‑binding transcriptional regulator
	?	NC_000913_3_pae_pgi	= 281914	19 (1.250)					coding (70/1155 nt)	yagA	CP4‑6 prophage; putative DNA‑binding transcriptional regulator

GGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/281770‑281903 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttcgccTCGCAGGACGGGGCGAACATCCGTTCCCTCTGCCGTCGCTTCGGCATTTCACCTGCCACCGGCTACAAGTGGCTCCAGCGCTGGGCTCAGGAAGGTGCCGCCGGTCTTCAGGACC  <  NC_000913_3_pae_pgi/281914‑281800                                                                                                                                                                                                                                                           GGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCTCGCAGGACGGGGCGA                                                                                                     <  4:40892/150‑1                                           CGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCTCGCAGGACGGGGCGAACATCCGTTCCCTCTGCCGTCGCTTCGGCATTT                                                                    >  1:106822/1‑141                                           CGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCTCGCAGGACGGGGCGAACATCCGTTCCCTCTGCCGTCGCTTCGGCATTT                                                                    <  2:106822/141‑1                                                                                GTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCTCGCAGGACGGGGCGAACATCCGT                                                                                             <  1:194423/79‑1                                                                                GTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCTCGCAGGACGGGGCGAACATCCGT                                                                                             >  2:194423/1‑79                                                                                             GGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCTCGCAGGACGGGGC                                                                                                       >  1:167907/1‑56                                                                                             GGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCTCGCAGGACGGGGC                                                                                                       <  2:167907/56‑1                                                                                                                                 TTCGCCTCGCAGGACGGGGCGAACATCCGTTCCCTCTGCCGTCGCTTCGGCATTTCACCTGCCACCGGCTACAAGTGGCTCCAGCGCTGGGCTCAGGAAGGTGCCGCCGGTCTTCAGGACC  <  3:32609/121‑1                                                                                                                                 TTCGCCTCGCAGGACGGGGCGAACATCCGTTCCCTCTGCCGTCGCTTCGGCATTTCACCTGCCACCGGCTACAAGTGGCTCCAGCGCTGGGCTCAGGAAGGTGCCGCCGGTCTTCAGGACC  >  4:32609/1‑121                                                                                                                                                                                                                                                           GGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/281770‑281903 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttcgccTCGCAGGACGGGGCGAACATCCGTTCCCTCTGCCGTCGCTTCGGCATTTCACCTGCCACCGGCTACAAGTGGCTCCAGCGCTGGGCTCAGGAAGGTGCCGCCGGTCTTCAGGACC  <  NC_000913_3_pae_pgi/281914‑281800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.