| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 281903 | 21 (1.300) | 7 (0.460) | 7/236 | 0.9 | 26.6% | coding (81/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913_3_pae_pgi | = 281914 | 19 (1.250) | coding (70/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
GGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCC > NC_000913_3_pae_pgi/281770‑282048 | ggTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCtcgcaggacggggcga < 4:40892‑M1/150‑17 (MQ=255) ttCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGccc > 2:158944/1‑133 (MQ=255) ttCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGccc < 1:158944/133‑1 (MQ=255) cGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGaacaa > 3:8587/1‑150 (MQ=255) gggAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGaacaaaa > 2:161952/1‑150 (MQ=255) gCGGAATGCGCGGCCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAg < 4:104211/150‑1 (MQ=255) gAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTAc > 1:9000/1‑150 (MQ=255) gggcggTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGAc < 1:192070/150‑1 (MQ=255) gggcggTCCTGAAGACCGGCGGCACCTTCCTGAGACCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGAc > 2:192070/1‑150 (MQ=255) ggTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAggcgaa < 3:32609‑M2/121‑7 (MQ=255) ggTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAggcgaa > 4:32609‑M2/1‑115 (MQ=255) cTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTAtc > 2:122355/1‑150 (MQ=255) ccGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCa > 2:1756/1‑150 (MQ=255) cggcggCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCtcgcaggacggggcgaacatccgttccctctgccgtcgcttcggcattt < 2:106822‑M1/141‑50 (MQ=255) cggcggCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCtcgcaggacggggcgaacatccgttccctctgccgtcgcttcggcattt > 1:106822‑M1/1‑92 (MQ=255) gcggcACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTa > 1:180293/1‑138 (MQ=255) gcggcACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTa < 2:180293/138‑1 (MQ=255) cccAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACt < 1:1756/150‑1 (MQ=255) ccAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTc < 4:8587/150‑1 (MQ=255) ccAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTc < 1:122355/150‑1 (MQ=255) aGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCa > 1:105785/1‑150 (MQ=255) gTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCtcgcaggacggggcgaacatccgt < 1:194423‑M1/79‑25 (MQ=255) gTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCtcgcaggacggggcgaacatccgt > 2:194423‑M1/1‑55 (MQ=255) cGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGc > 3:75142/1‑116 (MQ=255) cGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGc < 4:75142/116‑1 (MQ=255) aGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCa > 1:83590/1‑73 (MQ=255) aGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCa < 2:83590/73‑1 (MQ=255) ggTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCtcgcaggacggggc < 2:167907‑M1/56‑15 (MQ=255) ggTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCtcgcaggacggggc > 1:167907‑M1/1‑42 (MQ=255) aaaTGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAggcgaacatccgttccctctgccgtcgcttcggcatttcacctgccaccggctacaagtggctccagcgctgggctcaggaaggtgccgccg < 2:106822‑M2/141‑93 (MQ=255) aaaTGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAggcgaacatccgttccctctgccgtcgcttcggcatttcacctgccaccggctacaagtggctccagcgctgggctcaggaaggtgccgccg > 1:106822‑M2/1‑49 (MQ=255) gCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTcc < 2:9000/150‑1 (MQ=255) aCGGATGTTCGCCCCGTCCTGCGAggcgaacatccgttccctctgccgtcgcttcggcatttcacctgccaccggctac < 1:194423‑M2/79‑56 (MQ=255) aCGGATGTTCGCCCCGTCCTGCGAggcgaacatccgttccctctgccgtcgcttcggcatttcacctgccaccggctac > 2:194423‑M2/1‑24 (MQ=255) ttCGCCtcgcaggacggggcgaacatccgttccctctgccgtcgcttcggcatttcacctgccaccggctacaagtggctccagcgctgggctcaggaaggtgccgccggtcttcaggacc < 3:32609‑M1/121‑116 (MQ=255) ttCGCCtcgcaggacggggcgaacatccgttccctctgccgtcgcttcggcatttcacctgccaccggctacaagtggctccagcgctgggctcaggaaggtgccgccggtcttcaggacc > 4:32609‑M1/1‑6 (MQ=255) tCGCCCCGTCCTGCGAggcgaacatccgttccctctgccgtcgcttcggcatttcacctgccaccggctacaagtggctccagcgctgggctcaggaaggtgccgccggtcttcaggaccgcccgcgcattccgcaccattccccgaacc < 4:40892‑M2/150‑135 (MQ=255) gCCCCGTCCTGCGAggcgaacatccgttccctctgccgtcgcttcggcatttcacc > 1:167907‑M2/1‑14 (MQ=255) gCCCCGTCCTGCGAggcgaacatccgttccctctgccgtcgcttcggcatttcacc < 2:167907‑M2/56‑43 (MQ=255) | GGTTCGGGGAATGGTGCGGAATGCGCGGGCGGTCCTGAAGACCGGCGGCACCTTCCTGAGCCCAGCGCTGGAGCCACTTGTAGCCGGTGGCAGGTGAAATGCCGAAGCGACGGCAGAGGGAACGGATGTTCGCCCCGTCCTGCGAGGCGAACAAAACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCC > NC_000913_3_pae_pgi/281770‑282048 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |