| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 3749147 | 15 (0.930) | 4 (0.260) | 4/240 | 1.6 | 20.9% | coding (571/663 nt) | sgbH | 3‑keto‑L‑gulonate 6‑phosphate decarboxylase |
| ? | NC_000913_3_pae_pgi | = 3749165 | 16 (1.040) | coding (589/663 nt) | sgbH | 3‑keto‑L‑gulonate 6‑phosphate decarboxylase | |||||
ACAGGCCAGCGGGCAACAGTGGGGCGAAGCCGATCTGGCACGCATGAAGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGAT > NC_000913_3_pae_pgi/3748999‑3749279 | acaGGCCAGCGGGCAACAGTGGGGCGAAGCCGATCTGGCACGCATGAAGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCcgg > 4:22672/1‑150 (MQ=255) aaGCCGATCTGGCACGCATGAAGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATc < 3:22672/150‑1 (MQ=255) gATCTGGCACGCATGAAGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGgcg > 2:89957/1‑150 (MQ=255) aCGCATGAAGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGcgcctgccagtgcccgcccggcaataaa < 3:14033‑M1/138‑29 (MQ=255) aCGCATGAAGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGcgcctgccagtgcccgcccggcaataaa > 4:14033‑M1/1‑110 (MQ=255) aGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGAtt < 1:200512/150‑1 (MQ=255) tttCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATg > 1:6937/1‑150 (MQ=255) cAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGcgcctgccagtgcccgcccggcaa < 1:42613‑M1/117‑25 (MQ=255) cAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGcgcctgccagtgcccgcccggcaa > 2:42613‑M1/1‑93 (MQ=255) gCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACg > 1:134675/1‑150 (MQ=255) tttCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTggg > 4:111502/1‑150 (MQ=255) tCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGc < 2:157344‑M2/92‑2 (MQ=255) tCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGc > 1:157344‑M2/1‑91 (MQ=255) cGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCgcgtgc < 2:134675/150‑1 (MQ=255) gggATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGCGCgcgtgcg > 2:28820/1‑150 (MQ=255) ccccTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTgcgc < 1:191117/138‑1 (MQ=255) ccccTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTgcgc > 2:191117/1‑138 (MQ=255) ccTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAAtcatca > 4:99827/1‑150 (MQ=255) tgctgACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATNGACNCTATCTGGNGAGGTGCGCGTGCGTAATCATCAGt < 3:99827/150‑1 (MQ=255) tttAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGaaaa > 1:39039/1‑150 (MQ=255) tGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGCGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGAt < 1:28820/150‑1 (MQ=255) tttATTGCCGGGCGGGCACTGGCAGGCGcggcaataaacgctttcacgcggatatctttaaacagcggcaggtcagcaggggtaatcccgccagtaatggaaagctcaaggccgatatctgaaagcgccttcatgcgt < 3:14033‑M2/138‑111 (MQ=255) tttATTGCCGGGCGGGCACTGGCAGGCGcggcaataaacgctttcacgcggatatctttaaacagcggcaggtcagcaggggtaatcccgccagtaatggaaagctcaaggccgatatctgaaagcgccttcatgcgt > 4:14033‑M2/1‑28 (MQ=255) ttGCCGGGCGGGCACTGGCAGGCGcggcaataaacgctttcacgcggatatctttaaacagcggcaggtcagcaggggtaatcccgccagtaatggaaagctcaaggccgatatctg > 2:42613‑M2/1‑24 (MQ=255) ttGCCGGGCGGGCACTGGCAGGCGcggcaataaacgctttcacgcggatatctttaaacagcggcaggtcagcaggggtaatcccgccagtaatggaaagctcaaggccgatatctg < 1:42613‑M2/117‑94 (MQ=255) gcgcctgccagtgcccgcccggcaataaacgctttcacgcggatatctttaaacagcggcaggtcagcaggggtaatcccgccagtaatgga < 2:157344‑M1/92‑92 (MQ=255) gcgcctgccagtgcccgcccggcaataaacgctttcacgcggatatctttaaacagcggcaggtcagcaggggtaatcccgccagtaatgga > 1:157344‑M1/1‑1 (MQ=255) | ACAGGCCAGCGGGCAACAGTGGGGCGAAGCCGATCTGGCACGCATGAAGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGAT > NC_000913_3_pae_pgi/3748999‑3749279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |