New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 3749147	15 (0.930)	4 (0.260)	4/240	1.6	20.9%	coding (571/663 nt)	sgbH	3‑keto‑L‑gulonate 6‑phosphate decarboxylase
	?	NC_000913_3_pae_pgi	= 3749165	16 (1.040)					coding (589/663 nt)	sgbH	3‑keto‑L‑gulonate 6‑phosphate decarboxylase

AAGCCGATCTGGCACGCATGAAGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAG  >  NC_000913_3_pae_pgi/3749025‑3749314                                                                                                                                             |                                                                                                                                                      aaGCCGATCTGGCACGCATGAAGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATc                                                                                                                                              <  3:22672/150‑1 (MQ=255)      gATCTGGCACGCATGAAGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGgcg                                                                                                                                         >  2:89957/1‑150 (MQ=255)                      aGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGAtt                                                                                                                         <  1:200512/150‑1 (MQ=255)                            tttCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATg                                                                                                                   >  1:6937/1‑150 (MQ=255)                                        gCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACg                                                                                                       >  1:134675/1‑150 (MQ=255)                                                 tttCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTggg                                                                                              >  4:111502/1‑150 (MQ=255)                                                   tCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGc                                                                                                                                                      >  1:157344‑M2/1‑91 (MQ=255)                                                   tCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGc                                                                                                                                                      <  2:157344‑M2/92‑2 (MQ=255)                                                              cGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCgcgtgc                                                                                 <  2:134675/150‑1 (MQ=255)                                                               gggATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGCGCgcgtgcg                                                                                >  2:28820/1‑150 (MQ=255)                                                                      ccccTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTgcgc                                                                                     >  2:191117/1‑138 (MQ=255)                                                                      ccccTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTgcgc                                                                                     <  1:191117/138‑1 (MQ=255)                                                                        ccTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAAtcatca                                                                       >  4:99827/1‑150 (MQ=255)                                                                          tgctgACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATNGACNCTATCTGGNGAGGTGCGCGTGCGTAATCATCAGt                                                                     <  3:99827/150‑1 (MQ=255)                                                                                          tttAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGaaaa                                                     >  1:39039/1‑150 (MQ=255)                                                                                                          tGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGCGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGAt                                     <  1:28820/150‑1 (MQ=255)                                                                                                                  tttATTGCCGGGCGGGCACTGGCAGGCGcggcaataaacgctttcacgcggatatctttaaacagcggcaggtcagcaggggtaatcccgccagtaatggaaagctcaaggccgatatctgaaagcgccttcatgcgt                                         <  3:14033‑M2/138‑111 (MQ=255)                                                                                                                  tttATTGCCGGGCGGGCACTGGCAGGCGcggcaataaacgctttcacgcggatatctttaaacagcggcaggtcagcaggggtaatcccgccagtaatggaaagctcaaggccgatatctgaaagcgccttcatgcgt                                         >  4:14033‑M2/1‑28 (MQ=255)                                                                                                                      ttGCCGGGCGGGCACTGGCAGGCGcggcaataaacgctttcacgcggatatctttaaacagcggcaggtcagcaggggtaatcccgccagtaatggaaagctcaaggccgatatctg                                                          <  1:42613‑M2/117‑94 (MQ=255)                                                                                                                      ttGCCGGGCGGGCACTGGCAGGCGcggcaataaacgctttcacgcggatatctttaaacagcggcaggtcagcaggggtaatcccgccagtaatggaaagctcaaggccgatatctg                                                          >  2:42613‑M2/1‑24 (MQ=255)                                                                                                                                       gCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGc        >  3:88154/1‑150 (MQ=255)                                                                                                                                             gcgGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAg  <  4:88154/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                      AAGCCGATCTGGCACGCATGAAGGCGCTTTCAGATATCGGCCTTGAGCTTTCCATTACTGGCGGGATTACCCCTGCTGACCTGCCGCTGTTTAAAGATATCCGCGTGAAAGCGTTTATTGCCGGGCGGGCACTGGCAGGCGCGGCAAATCCGGCGCAAGTGGCTGGCGATTTCCATGCGCAAATCGACGCTATCTGGGGAGGTGCGCGTGCGTAATCATCAGTTAGGGATTTATGAAAAAGCGCTGGCGAAAGATCTCTCCTGGCCGGAGCGGCTGGTGCTGGCAAAAAG  >  NC_000913_3_pae_pgi/3749025‑3749314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.