| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 4569207 = | NA (NA) | 4 (0.260) | 4/240 | 1.6 | NA | noncoding (2/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_pgi | 4569230 = | NA (NA) | noncoding (25/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GTTGCAGAATGGGGCGGATCCTGAATGGATACAAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGA > NC_000913_3_pae_pgi/4569058‑4569351 | cctgtgactcgttttatctttgctgggtcatcgccacgttccagcctgaattaagcaaagtacgctttgttcatgccggatgccatgtgaacgcctgaccaggtctacaaaaatctttaaagttcaatatatttaatgggttatgtagac > 1:188372‑M1/150‑150 (MQ=255) gCGGATCCTGAATGGATACAAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATg < 2:44175/150‑1 (MQ=255) tCCTGAATGGATACAAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTAt < 1:181686/150‑1 (MQ=255) gAATGGATACAAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAgg < 3:110292/150‑1 (MQ=255) gccacgttccagcctgaattaagcaaagtacgctttgttcatgccggatgccatgtgaacgcctgaccaggtctacaaaaatctttaaagttcaatatatttaatgggttatgtagaCCTGATGCGCTATGCTTATCAGGTCTACATAAc < 3:47620‑M1/33‑1 (MQ=255) ccagcctgaattaagcaaagtacgctttgttcatgccggatgccatgtgaacgcctgaccaggtctacaaaaatctttaaagttcaatatatttaatgggttatgtagaCCTGa > 1:110705‑M1/110‑114 (MQ=255) ccagcctgaattaagcaaagtacgctttgttcatgccggatgccatgtgaacgcctgaccaggtctacaaaaatctttaaagttcaatatatttaatgggttatgtagaCCTGa < 2:110705‑M1/5‑1 (MQ=255) cTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATAtt < 1:111834/150‑1 (MQ=255) acgctttgttcatgccggatgccatgtgaacgcctgaccaggtctacaaaaatctttaaagttcaatatatttaatgtgttatgtagaCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGAttt > 4:47620‑M1/89‑150 (MQ=255) aGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTgg > 1:9695/1‑150 (MQ=255) cTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTcaca > 2:108779/1‑150 (MQ=255) cTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTcaca < 1:108779/150‑1 (MQ=255) tgagcgtgagcgCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGAt > 4:47480/1‑68 (MQ=255) tgagcgtgagcgCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGAt < 3:47480/68‑1 (MQ=255) aacgcctgaccaggtctacaaaaatctttaaagttcaatatatttaatgggttatgtagaCCTGATGCGCTATGCTTATCAGGTCt < 1:97146‑M1/26‑1 (MQ=255) aacgcctgaccaggtctacaaaaatctttaaagttcaatatatttaatgggttatgtagaCCTGATGCGCTATGCTTATCAGGTCt > 2:97146‑M1/61‑86 (MQ=255) ctgaccaggtctacaaaaatctttaaagttcaatatatttaatgggttatgtagaCCTGAt < 2:181025‑M1/6‑1 (MQ=255) ctgaccaggtctacaaaaatctttaaagttcaatatatttaatgggttatgtagaCCTGAt > 1:181025‑M1/56‑61 (MQ=255) ggCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTGTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAg < 4:108911/150‑1 (MQ=255) cAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTg < 2:327/144‑1 (MQ=255) cAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTg > 1:327/1‑144 (MQ=255) aaaCGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGt > 1:194757/1‑150 (MQ=255) agcagcCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGaa > 2:68322/1‑55 (MQ=255) agcagcCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGaa < 1:68322/55‑1 (MQ=255) agcagcCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGa < 2:9695/150‑1 (MQ=255) | GTTGCAGAATGGGGCGGATCCTGAATGGATACAAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGA > NC_000913_3_pae_pgi/4569058‑4569351 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |