| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 4569207 = | NA (NA) | 4 (0.260) | 4/240 | 1.6 | NA | noncoding (2/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_pgi | 4569230 = | NA (NA) | noncoding (25/99 nt) | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP347 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
AAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGG > NC_000913_3_pae_pgi/4569090‑4569378 | gccacgttccagcctgaattaagcaaagtacgctttgttcatgccggatgccatgtgaacgcctgaccaggtctacaaaaatctttaaagttcaatatatttaatgggttatgtagaCCTGATGCGCTATGCTTATCAGGTCTACATAAc < 3:47620‑M1/33‑1 (MQ=255) cTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATAtt < 1:111834/150‑1 (MQ=255) acgctttgttcatgccggatgccatgtgaacgcctgaccaggtctacaaaaatctttaaagttcaatatatttaatgtgttatgtagaCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGAttt > 4:47620‑M1/89‑150 (MQ=255) aGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTgg > 1:9695/1‑150 (MQ=255) cTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTcaca < 1:108779/150‑1 (MQ=255) cTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTcaca > 2:108779/1‑150 (MQ=255) aacgcctgaccaggtctacaaaaatctttaaagttcaatatatttaatgggttatgtagaCCTGATGCGCTATGCTTATCAGGTCt > 2:97146‑M1/61‑86 (MQ=255) aacgcctgaccaggtctacaaaaatctttaaagttcaatatatttaatgggttatgtagaCCTGATGCGCTATGCTTATCAGGTCt < 1:97146‑M1/26‑1 (MQ=255) ggCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTGTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAg < 4:108911/150‑1 (MQ=255) aaatctttaaagttcaatatatttaatgggttatgtagacctgataagcatagcgcatcaggTCTACATAACACATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGt > 4:47620‑M2/63‑150 (MQ=255) cAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTg > 1:327/1‑144 (MQ=255) cAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTg < 2:327/144‑1 (MQ=255) aaaCGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGt > 1:194757/1‑150 (MQ=255) gttatgtagacctgataagcatagcgcatcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGc < 3:47620‑M2/117‑1 (MQ=255) agcagcCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGaa < 1:68322/55‑1 (MQ=255) agcagcCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGaa > 2:68322/1‑55 (MQ=255) agcagcCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGa < 2:9695/150‑1 (MQ=255) agacctgataagcatagcgcatcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGtt < 1:97146‑M2/60‑1 (MQ=255) agacctgataagcatagcgcatcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGtt > 2:97146‑M2/27‑86 (MQ=255) ATGCGCTATGTTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCaaa > 2:31298‑M1/1‑150 (MQ=255) gcTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTg < 2:113965/65‑1 (MQ=255) gcTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTg > 1:113965/1‑65 (MQ=255) atcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAg > 1:181025‑M2/7‑61 (MQ=255) atcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAg < 2:181025‑M2/55‑1 (MQ=255) tcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTgg < 2:110705‑M2/109‑1 (MQ=255) tcaggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTgg > 1:110705‑M2/6‑114 (MQ=255) gTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAgg > 1:188372‑M2/2‑150 (MQ=255) | AAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGG > NC_000913_3_pae_pgi/4569090‑4569378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |