New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	1394851 =	12 (0.740)	4 (0.270)	4/232	1.5	30.7%	intergenic (+11/+40)	mppA/ynaI	murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit/mechanosensitive channel protein, very small conductance
	?	NC_000913_3_pae_pgi	1394881 =	7 (0.470)					intergenic (+41/+10)	mppA/ynaI	murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit/mechanosensitive channel protein, very small conductance

CATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAGGCAAAGTCCGCGCCGTGTGACTGTACA  >  NC_000913_3_pae_pgi/1394705‑1394975                                                                                                                                                   |                                                                                                                             ggctgaatggcttgctgcacagcaagacgtttatttgaagattatcgatattgtacagtcacacggcgcggactttgccttccccagccagacgctgtatatggataacattacaccgccggaacagggtcgctaaatcagacatcACTg                                                                                                                           <  1:85322‑M1/4‑1 (MQ=255)     gAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGt                                                                                                                       >  2:54085/1‑150 (MQ=255)                                            ggACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTtgt                                                                                                              >  1:56319/1‑120 (MQ=255)                                            ggACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTtgt                                                                                                              <  2:56319/120‑1 (MQ=255)                                                                              ccATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATc                                                      >  2:130134/1‑142 (MQ=255)                                                                              ccATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATc                                                      <  1:130134/142‑1 (MQ=255)                                                                                  taataaTCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCtt                                                                                                                >  1:188637/1‑80 (MQ=255)                                                                                  taataaTCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCtt                                                                                                                <  2:188637/80‑1 (MQ=255)                                                                                    ccagccagacgctgtatatggataacattacaccgccggaacagggtcgctaaatcagacatcACTGGCGTTACCCTTGTGCATAACGCCAGt                                                                                                 <  1:3762‑M1/30‑1 (MQ=255)                                                                                    ccagccagacgctgtatatggataacattacaccgccggaacagggtcgctaaatcagacatcACTGGCGTTACCCTTGTGCATAACGCCAGt                                                                                                 >  2:3762‑M1/64‑93 (MQ=255)                                                                                             aaGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTctggctgg                                  <  4:69789/147‑1 (MQ=255)                                                                                             aaGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTctggctgg                                  >  3:69789/1‑147 (MQ=255)                                                                                               gATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAg                             <  3:42775/150‑1 (MQ=255)                                                                                                   atatggataacattacaccgccggaacagggtcgctaaatcagacatcACTGGCGTTACCCTTGTGCATAACGCCa                                                                                                   <  2:132733‑M1/28‑1 (MQ=255)                                                                                                   atatggataacattacaccgccggaacagggtcgctaaatcagacatcACTGGCGTTACCCTTGTGCATAACGCCa                                                                                                   >  1:132733‑M1/49‑76 (MQ=255)                                                                                                               ggACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAGGCAAAGTCCGCGCCgt             >  1:7268/1‑150 (MQ=255)                                                                                                                          atTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAGGCAAAGTCCGCGCCGTGTGACTGTACa  >  2:85322/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                             CATGGAGCAAGCACCGATTGCACCAATTTATCAATATACCAATGGACGATTAATCAAGCCGTGGCTGAAAGGTTATCCCATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAGGCAAAGTCCGCGCCGTGTGACTGTACA  >  NC_000913_3_pae_pgi/1394705‑1394975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.