New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	1394851 =	12 (0.740)	4 (0.270)	4/232	1.5	30.7%	intergenic (+11/+40)	mppA/ynaI	murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit/mechanosensitive channel protein, very small conductance
	?	NC_000913_3_pae_pgi	1394881 =	7 (0.470)					intergenic (+41/+10)	mppA/ynaI	murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit/mechanosensitive channel protein, very small conductance

CCATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAGGCAAAGTCCGCGCCGTGTGACTGTACAATATCGATAATCTTCAAATAAACGTCTTGCTGTGCAGCAAGCCATTCAGCC  >  NC_000913_3_pae_pgi/1394782‑1395026                                                                                                    |                                                                                                                                                  ccATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATc                                                                                                         <  1:130134/142‑1 (MQ=255) ccATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATc                                                                                                         >  2:130134/1‑142 (MQ=255)                aaGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTctggctgg                                                                                     >  3:69789/1‑147 (MQ=255)                aaGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTctggctgg                                                                                     <  4:69789/147‑1 (MQ=255)                  gATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAg                                                                                <  3:42775/150‑1 (MQ=255)                                  ggACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAGGCAAAGTCCGCGCCgt                                                                >  1:7268/1‑150 (MQ=255)                                             atTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAGGCAAAGTCCGCGCCGTGTGACTGTACa                                                     >  2:85322/1‑150 (MQ=255)                                                                      actggcgttatgcacaagggtaacgccagtGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTctggctgg                                                                                     <  1:3762‑M2/63‑1 (MQ=255)                                                                      actggcgttatgcacaagggtaacgccagtGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTctggctgg                                                                                     >  2:3762‑M2/31‑93 (MQ=255)                                                                       CTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAGGCAAAGTCCGCGCCGTGTGACTGTACAATATCGATAATCTTCAAATAAACGTc                           <  3:80502‑M1/150‑1 (MQ=255)                                                                        tggcgttatgcacaagggtaacgccagtGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCatat                                                                                                    >  1:132733‑M2/29‑76 (MQ=255)                                                                        tggcgttatgcacaagggtaacgccagtGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCatat                                                                                                    <  2:132733‑M2/48‑1 (MQ=255)                                                                                                cagtGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAGGCAAAGTCCGCGCCGTGTGACTGTACAATATCGATAATCTTCAAATAAACGTCTTGCTGTGCAGCAAGCCATTCAGcc  <  1:85322‑M2/146‑1 (MQ=255)                                                                                                    |                                                                                                                                                  CCATTAATAATCCTGAAGATGTGGCGTACAGTCGGACTATGTATATTGTGAAGCATTGATGTGATGGGAACTGGCGTTACCCTTGTGCATAACGCCAGTGATGTCTGATTTAGCGACCCTGTTCCGGCGGTGTAATGTTATCCATATACAGCGTCTGGCTGGGGAAGGCAAAGTCCGCGCCGTGTGACTGTACAATATCGATAATCTTCAAATAAACGTCTTGCTGTGCAGCAAGCCATTCAGCC  >  NC_000913_3_pae_pgi/1394782‑1395026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.