New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 42354851299 (16.950)47 (0.660) 32/268 1.6 3.6% intergenic (+77/‑37) yjbE/yjbF extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein
?NC_000913_3_pae_pgi = 4235489 1317 (18.480)intergenic (+81/‑33) yjbE/yjbF extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1472 total aligned reads displayed.

CGGCAACCGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCTGTTCGGCACGCCAGGCGTACAGCT  >  NC_000913_3_pae_pgi/4235341‑4235637
                                                                                                                                                     |                                                                                                                                                    
 ggCAACCGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGg                                                                                                                                                     <  1:921703‑M2/149‑2 (MQ=255)
 ggCAACCGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCAGCCG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGg                                                                                                                                                     <  1:1230471‑M2/149‑2 (MQ=255)
     aCCGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGgtgtg                                                                                                                                                 >  2:674150‑M2/1‑144 (MQ=255)
     aCCGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGgtgtg                                                                                                                                                 >  2:852150‑M2/1‑144 (MQ=255)
      cgggcggCGGTTATGCTTCTAATCCCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTgg                                                                                                                                                <  2:306408/144‑1 (MQ=255)
      ccGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGgtgtgg                                                                                                                                                >  1:221121‑M2/1‑143 (MQ=255)
       cgtgggcggtGCTGGTGCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCACAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGgtgtggt                                                                                                                                               >  2:1029053‑M2/5‑142 (MQ=255)
              ggTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTg                                                                                                                                        <  2:1001416/149‑1 (MQ=255)
               gTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGc                                                                                                                                       >  1:484110/1‑149 (MQ=255)
                     gTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCctct                                                                                                                                 <  1:819046/149‑1 (MQ=255)
                       tCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTgg                                                                                                                               <  2:1223192/149‑1 (MQ=255)
                        cTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGga                                                                                                                              <  1:784657/149‑1 (MQ=255)
                           aTAGCGGGACCACGACAACCACGAACACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGCCTAGACGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGagaa                                                                                                                           <  2:611870/149‑1 (MQ=255)
                           aTACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGagaa                                                                                                                           <  2:1128177/149‑1 (MQ=255)
                            tACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGagaag                                                                                                                          >  2:1080718/1‑149 (MQ=255)
                              ccGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAagag                                                                                                                        >  1:425056/1‑149 (MQ=255)
                              ccGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATCCTGCCCCCCTGGAGAagag                                                                                                                        >  2:878679/1‑149 (MQ=255)
                               cGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGgagacacgt                                                                                                                       >  2:324895/1‑144 (MQ=255)
                                  gACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGt                                                                                                                    <  1:1216941/149‑1 (MQ=255)
                                     caccacAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGgtgtggtt                                                                                                                                              <  1:845578‑M2/120‑9 (MQ=255)
                                     caccacAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGaa                                                                                                                 <  1:339321/149‑1 (MQ=255)
                                      accacAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAg                                                                                                                >  1:95328/1‑149 (MQ=255)
                                       ccacAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTAtt                                                                                                                                           <  1:111770/121‑1 (MQ=255)
                                             ccACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAGGCGACCTg                                                                                                         >  2:836107/1‑149 (MQ=255)
                                             ccACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTg                                                                                                         >  1:655840/1‑149 (MQ=255)
                                              cACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGc                                                                                                        >  1:40364/1‑149 (MQ=255)
                                               aCGACCACCAGTACCCAGTAATAAAGAATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACCCTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCa                                                                                                       <  1:766987/149‑1 (MQ=255)
                                                cGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCAc                                                                                                      >  1:1149422/1‑149 (MQ=255)
                                                   ccaccaGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGgtgtg                                                                                                                                                 <  1:1282186‑M2/103‑6 (MQ=255)
                                                   ccaccaGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGAGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCa                                                                                                   >  1:727235/1‑149 (MQ=255)
                                                   ccaccaGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCAGTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCa                                                                                                   >  1:1174101/1‑149 (MQ=255)
                                                      ccaGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGaa                                                                                                                 >  1:1091737/1‑132 (MQ=255)
                                                       caGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGGGAAGAGTCGTGAAGCGACCTGCCCTCATTCt                                                                                               >  2:94010/1‑149 (MQ=255)
                                                       caGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCt                                                                                               >  1:670524/1‑149 (MQ=255)
                                                             ccAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTAGAGAAGAGTCGTGAAGCGACCt                                                                                                          <  2:541380/132‑1 (MQ=255)
                                                               aGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGgtgtggttatggttaatcccttcatacttctagccacagatgcaatgactc                                                                                                   <  1:867329‑M2/137‑52 (MQ=255)
                                                               aGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGcc                                                                                       <  1:55783/149‑1 (MQ=255)
                                                                gTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCt                                                                                      <  2:454378/149‑1 (MQ=255)
                                                                gTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCt                                                                                      >  2:753853/1‑149 (MQ=255)
                                                                 taataaAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGagaaga                                                                                                                         <  1:593828/113‑1 (MQ=255)
                                                                    taaAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGtta                                                                                  <  1:132029/149‑1 (MQ=255)
                                                                        gtatgtatCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGgtgtgg                                                                                                                                                >  1:252716‑M2/1‑77 (MQ=255)
                                                                         tatgtatCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACa                                                                             <  2:484110/149‑1 (MQ=255)
                                                                         tatgtatCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACa                                                                             >  2:912741/1‑149 (MQ=255)
                                                                          atgtatCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAg                                                                            >  2:1060281/1‑149 (MQ=255)
                                                                           tgtatCCCCAAAAGAATTAGAGCCATTGCATCTG‑TTGCAAGAAGTATGAAGGGATTAACCATAACCACACTCCTGCGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACGCATTCTTATCTGCCTGTAATAACAgg                                                                           <  1:201177/149‑1 (MQ=255)
                                                                            ttatCCCCAAAATAATTCGAGTCATTGAATCCGCAGGCTA‑AAGTATAAATTGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTCTCTGCCTGTTATTCCAGGc                                                                          <  2:273885/148‑1 (MQ=255)
                                                                            ggagccccAGAATAATTCGAGTTATTGCATATG‑TGGCCAGAAGTATGGTGGTATTAACCATAACCACGCTCCGGTGTGGTTATTCCGCCCCCATGGGGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTAAAGGc                                                                          <  2:974413/145‑1 (MQ=255)
                                                                              atCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACGCCGGTGGGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCt                                                                        >  2:405742/1‑149 (MQ=255)
                                                                                 cccAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGtt                                                                     >  2:469377/1‑149 (MQ=255)
                                                                                 cccAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGtt                                                                     >  1:886521/1‑149 (MQ=255)
                                                                                 cccAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGAGTAACCATAACCACACCCTGgtgcggttatggttaatcccctcatacttctacccacagatgcaatgactcgaattattttggggatgcatactttattac                                                                     <  1:38710‑M2/149‑82 (MQ=255)
                                                                                  ccAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATTAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTc                                                                    <  1:361650/149‑1 (MQ=255)
                                                                                  ccAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGaa                                                                                                                 >  2:183395/1‑104 (MQ=255)
                                                                                  ccAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGaa                                                                                                                 <  1:183395/104‑1 (MQ=255)
                                                                                  ccAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGa                                                                                                             <  2:230715/108‑1 (MQ=255)
                                                                                  ccAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTc                                                                    >  1:1020805/1‑149 (MQ=255)
                                                                                    aaaaTAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAGGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAg                                                                  >  2:512042/1‑149 (MQ=255)
                                                                                     aaaTAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGga                                                                                                                              >  2:72768/1‑88 (MQ=255)
                                                                                           ttCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGAc                                                           >  2:59044/1‑149 (MQ=255)
                                                                                            tCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACt                                                          >  1:806856/1‑149 (MQ=255)
                                                                                               aGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTaaa                                                       <  2:1178080/149‑1 (MQ=255)
                                                                                               aGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTaaa                                                       <  1:899344/149‑1 (MQ=255)
                                                                                               aGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTaaa                                                       <  2:894240/149‑1 (MQ=255)
                                                                                                 tCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGa                                                                                                             <  2:1115769/93‑1 (MQ=255)
                                                                                                 tCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGACTGTTCAGCCACGACTAAaga                                                     >  1:980025/1‑149 (MQ=255)
                                                                                                   aTTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGgtgtggttatggttaatcccttcatacttctagccacagctgcactgactcgaattattttggggatacatactttactactggctactggtggtcgtg                                                   <  2:694219‑M2/149‑100 (MQ=255)
                                                                                                   aTTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGc                                                                                        <  2:204624/112‑1 (MQ=255)
                                                                                                   aTTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGc                                                   >  1:470552/1‑149 (MQ=255)
                                                                                                   aTTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGGGGTTCTTCTGCCCCTCTGGAGAAGAGCCGTGAACCGACCTGCACTCATTCGTGTCTCCTTGTTTTTACAGGCCTGTTCAGGCACGGCTagctagc                                                   >  1:444882/1‑143 (MQ=255)
                                                                                                    ttgaagcTG‑CGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACAACTAAAGAGCt                                                  >  2:1212105/7‑149 (MQ=255)
                                                                                                      gtttCTG‑CGGCCAGATGTACGAGGGGATTAACCACAGCCACACCCCGGGCTGGTCATTCTTCCCCCCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTgg                                                <  1:273380/146‑1 (MQ=255)
                                                                                                      gCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTgg                                                <  1:297460/149‑1 (MQ=255)
                                                                                                                gCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCAc                                       >  1:622710/1‑149 (MQ=255)
                                                                                                                  tAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACtg                                     >  2:258569/1‑149 (MQ=255)
                                                                                                                   aGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACtgt                                    <  2:350575/149‑1 (MQ=255)
                                                                                                                   aGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCACTCGGTAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACtgt                                    <  1:698268/149‑1 (MQ=255)
                                                                                                                    gAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTCTCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACtgtg                                   <  2:565933/149‑1 (MQ=255)
                                                                                                                    gAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACtgtg                                   <  2:153019/149‑1 (MQ=255)
                                                                                                                    gAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACtgtg                                   <  2:1314595/149‑1 (MQ=255)
                                                                                                                    gAAGGATGAAGGGATTAACCACAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTTTTATCTGCCTGTTATTACAGGCCTGTTCAGTCACGACTAAAGAGCTGGGCAATTCACtgtg                                   <  1:1045068/149‑1 (MQ=255)
                                                                                                                     aaGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAGGAGCTGGGCAATTCACTGTgg                                  >  2:42589/1‑149 (MQ=255)
                                                                                                                         aTGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACa                              <  2:638119/149‑1 (MQ=255)
                                                                                                                           gAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGt                            >  1:1072832/1‑149 (MQ=255)
                                                                                                                            aaGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAagag                                                    >  2:1247837/1‑124 (MQ=255)
                                                                                                                                gATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCTGtt                       >  1:320909/1‑149 (MQ=255)
                                                                                                                                 aTTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCt                                                                                      >  2:783390/1‑85 (MQ=255)
                                                                                                                                  ttAACCATAACCACACTCCGGAGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTCCAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGCCAGTCTGtcgg                     >  1:1126977/1‑146 (MQ=255)
                                                                                                                                     accataaccaCACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCTGTTCGGCa                  <  1:165343/149‑1 (MQ=255)
                                                                                                                                      ccataaccaCACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCTGTTCGGCAc                 >  2:812364/1‑149 (MQ=255)
                                                                                                                                      ccataaccaCACTCCGGTGTGGTTATTCTGCCCCTATGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCTGTTc                      >  2:1150435/1‑144 (MQ=255)
                                                                                                                                       cataaccaCACTCCGgtgtggttatggttaatcccttcatacttctagccacagatgcaatgactcgaattattttggggatacatactttattactgggtactggtggtcgtggttgtggtggtcccggtattagaa                           <  2:1097327‑M2/138‑124 (MQ=255)
                                                                                                                                         taaccaCACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGACGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCAGTTCGGCACGcc              >  1:509859/1‑149 (MQ=255)
                                                                                                                                          aaccaCACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCTGTTCGGCACGCCa             <  2:127910/149‑1 (MQ=255)
                                                                                                                                               cacTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCTGTTCGGCACGCCAGGCGt        >  1:533735/1‑149 (MQ=255)
                                                                                                                                                  tCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGCCTAAAGAGCTGGGCGATTCACTGTGGGACGGTCTGTTCGGCACGCCAGGCGTACa     >  1:10006/1‑149 (MQ=255)
                                                                                                                                                  tCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGCCTAAAGAGCTGGGCAATTCACTGTGGTACCGTCTGTTCGGCACGCCACGCGTACa     >  1:119982/1‑149 (MQ=255)
                                                                                                                                                  tCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACtgtg                                   <  2:371736/119‑1 (MQ=255)
                                                                                                                                                  tCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCTGTTCGGCACGCCAGGCGTACa     >  1:1264575/1‑149 (MQ=255)
                                                                                                                                                  tCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCTGTTCGGCACGCCAGGCGTACa     <  2:28953/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
CGGCAACCGGTGGCGGTGATGGTTCTAATACCGGGACCACCACAACCACGACCACCAGTACCCAGTAATAAAGTATGTATCCCCAAAATAATTCGAGTCATTGCATCTG‑TGGCTAGAAGTATGAAGGGATTAACCATAACCACACTCCGGTGTGGTTATTCTGCCCCTCTGGAGAAGAGTCGTGAAGCGACCTGCACTCATTCTTATCTGCCTGTTATTACAGGCCTGTTCAGCCACGACTAAAGAGCTGGGCAATTCACTGTGGGACAGTCTGTTCGGCACGCCAGGCGTACAGCT  >  NC_000913_3_pae_pgi/4235341‑4235637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.