New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 2041152 =NA (NA)4 (0.100) 4/268 5.3 NA noncoding (1/34 nt) REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913_3_hsa_tpiA 2041182 = NA (NA)noncoding (31/34 nt) REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTC  >  NC_000913_3_hsa_tpiA/2041005‑2041297
                                                                                                                                                   |                                                                                                                                                 
cAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCCAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGc                                                                                                                                                  <  1:500428/149‑1 (MQ=255)
     gCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAt                                                                                                                                             >  1:20494/1‑149 (MQ=255)
                   ggctggctGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGcc                                                                                                                               <  1:286413/149‑1 (MQ=255)
                        gctgTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAAGTATCTGTATAACTGCAGATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATc                                                                                                                          <  2:352372/149‑1 (MQ=255)
                            tACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGc                                                                                                                      >  1:589582/1‑149 (MQ=255)
                             aCTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCa                                                                                                                     <  2:284338/149‑1 (MQ=255)
                                 cTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTCGCGCGAGCGCCCTATCCGGCATaca                                                                                                                 >  2:560774/1‑149 (MQ=255)
                                        ccTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCg                                                                                                          >  2:71015/1‑149 (MQ=255)
                                              ggTATGAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAg                                                                                                    >  1:126756/1‑149 (MQ=255)
                                                tataAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGt                                                                                                  <  1:71015/149‑1 (MQ=255)
                                                tataAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGATCACAACAAATTATCTGTATCACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCAGACACATATCGCATCAGGt                                                                                                  >  2:190644/1‑149 (MQ=255)
                                                     gaagTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGt                                                                                             >  1:190374/1‑149 (MQ=255)
                                                        ggagCGGTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTc                                                                                          >  2:450666/4‑149 (MQ=255)
                                                             gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTTTCGGCGAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTg                                                                                     >  2:691763/1‑149 (MQ=255)
                                                             gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTg                                                                                     >  2:692211/1‑149 (MQ=255)
                                                               tCCCTTTTTAACCGGTTACGCAAGCAGGTTCACCACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtc                                                                                   <  2:502174/149‑1 (MQ=255)
                                                                cccTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGa                                                                                                             <  1:88224/122‑1 (MQ=255)
                                                                cccTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGa                                                                                                             >  2:88224/1‑122 (MQ=255)
                                                                 ccTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAtgtg                                                                                                                                          >  2:612368/1‑92 (MQ=255)
                                                                 ccTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGAtgtg                                                                                                                                          <  1:612368/92‑1 (MQ=255)
                                                                  cTTTTTAGCCGGTTACGCAAGCAGGTTCACAACAAATTAACTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCGTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTAAGTTTCGTTTGtcatc                                                                                <  2:590066/149‑1 (MQ=255)
                                                                  cTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtcatc                                                                                >  2:194548/1‑149 (MQ=255)
                                                                     tttAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAAc                                                                             <  2:105589/149‑1 (MQ=255)
                                                                          ccGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATc                                                                                                                          <  2:150764/99‑1 (MQ=255)
                                                                          ccGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGGGGCGCGAGCGCCCTATc                                                                                                                          >  1:150764/1‑99 (MQ=255)
                                                                                 cGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCa                                                                 <  2:270258/149‑1 (MQ=255)
                                                                                  gCAAGCAGGTTCACAACAAATTATCTGTATAACTTAATATTGCCGACAAAGTAAGCGTTATACCTGCCGGATGAGGCGCGAGCGCCCTATCCGCAATACACAGATCGCATCAGGTTATATTCCGTTTGTCATCAACATCAAATCACCac                                                                >  2:634926/1‑148 (MQ=255)
                                                                                             gacaacaAAGTCTCTGGATAGCGTCGTGCGGCCGACAAAGTACGCGTTATCTCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGAGCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAatttatt                                                     <  2:218516/148‑1 (MQ=255)
                                                                                               caacaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGcc                                                                                                                               <  2:283726/73‑1 (MQ=255)
                                                                                               caacaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGcc                                                                                                                               >  1:283726/1‑73 (MQ=255)
                                                                                                aacaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAAtttatttta                                                  >  1:33212/1‑149 (MQ=255)
                                                                                                           tGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAaga                                       <  1:450666/149‑1 (MQ=255)
                                                                                                           tGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTAAAATCACCAACATACCTTACTTCATTTCAATAaga                                       <  2:535232/149‑1 (MQ=255)
                                                                                                            gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAagat                                      >  2:328198/1‑149 (MQ=255)
                                                                                                             tatcACTTCATGTGCCTGACAAAGTACGCGTTATCCCTGCAGGATTTGGCTCCAGCGCCGTAGCCCACATACGCAGATCTCATCAGGTTCTGCTCCCCTTGTCATCAACCTCACATCACCAAACTGATTTTGTTTTTTTCAATAggata                                     >  2:124711/1‑149 (MQ=255)
                                                                                                                   ttCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCCAAATAATTTATTTTCTTTTCATAtgatgtattac                               >  2:136426/1‑142 (MQ=255)
                                                                                                                          tGCCCACAAAGTACGCGTTATCCGTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATATTTCGTTTTTCATCAGCCTCAAATCACCAAAATAATTTATCTTATTTCAATAAGATAGATAAGTAGAACt                        <  1:607932/149‑1 (MQ=255)
                                                                                                                               aCAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTACAATAAGATAGATAAGTAGAACTAAGaa                   >  1:111824/1‑149 (MQ=255)
                                                                                                                               aCAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAAGAATTTATTTTCTTTATAACAGATAGATAAGTAGAACTgagag                   >  2:31981/1‑148 (MQ=255)
                                                                                                                                 aaaGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAg                 >  2:90262/1‑149 (MQ=255)
                                                                                                                                     tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAATATAATTTATTTTATTTTATTTAGATAGATTGGTAGTACTGTGATAGCGAt             >  1:55652/1‑149 (MQ=255)
                                                                                                                                     tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCAt             <  1:411578/149‑1 (MQ=255)
                                                                                                                                     tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATCCATTTCGCCCCAATAAGATAGATAAGTAGAACTGAGAAAGCCAt             <  1:173633/149‑1 (MQ=255)
                                                                                                                                       cgcgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGc           >  1:189389/1‑149 (MQ=255)
                                                                                                                                        gcgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAATATAGATAAGTAGAACTGAGAAAGCCATGct          >  2:405816/1‑149 (MQ=255)
                                                                                                                                             aTCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAAGCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGt     <  1:4300/149‑1 (MQ=255)
                                                                                                                                                tatGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTTAATAAGAAAGATAAGTAGAACTGAGAAAACGATGCTCTCGTTTc  >  2:558021/3‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
CAGCCGCTCATCTACGCTGGGCTGGCTGTACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTC  >  NC_000913_3_hsa_tpiA/2041005‑2041297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.