New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 2041152 =NA (NA)4 (0.100) 4/268 5.3 NA noncoding (1/34 nt) REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913_3_hsa_tpiA 2041182 = NA (NA)noncoding (31/34 nt) REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

ACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCTATATGTTACA  >  NC_000913_3_hsa_tpiA/2041034‑2041329
                                                                                                                                                    |                                                                                                                                                   
aCTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCa                                                                                                                                                     <  2:284338/149‑1 (MQ=255)
    cTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTCGCGCGAGCGCCCTATCCGGCATaca                                                                                                                                                 >  2:560774/1‑149 (MQ=255)
           ccTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCg                                                                                                                                          >  2:71015/1‑149 (MQ=255)
                 ggTATGAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAg                                                                                                                                    >  1:126756/1‑149 (MQ=255)
                   tataAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGt                                                                                                                                  <  1:71015/149‑1 (MQ=255)
                   tataAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGATCACAACAAATTATCTGTATCACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCAGACACATATCGCATCAGGt                                                                                                                                  >  2:190644/1‑149 (MQ=255)
                        gaagTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGt                                                                                                                             >  1:190374/1‑149 (MQ=255)
                           ggagCGGTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTc                                                                                                                          >  2:450666/4‑149 (MQ=255)
                                gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTTTCGGCGAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTg                                                                                                                     >  2:691763/1‑149 (MQ=255)
                                gTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTg                                                                                                                     >  2:692211/1‑149 (MQ=255)
                                  tCCCTTTTTAACCGGTTACGCAAGCAGGTTCACCACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtc                                                                                                                   <  2:502174/149‑1 (MQ=255)
                                   cccTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGa                                                                                                                                             <  1:88224/122‑1 (MQ=255)
                                   cccTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGa                                                                                                                                             >  2:88224/1‑122 (MQ=255)
                                     cTTTTTAGCCGGTTACGCAAGCAGGTTCACAACAAATTAACTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCGTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTAAGTTTCGTTTGtcatc                                                                                                                <  2:590066/149‑1 (MQ=255)
                                     cTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGtcatc                                                                                                                >  2:194548/1‑149 (MQ=255)
                                        tttAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAAc                                                                                                             <  2:105589/149‑1 (MQ=255)
                                                    cGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCa                                                                                                 <  2:270258/149‑1 (MQ=255)
                                                     gCAAGCAGGTTCACAACAAATTATCTGTATAACTTAATATTGCCGACAAAGTAAGCGTTATACCTGCCGGATGAGGCGCGAGCGCCCTATCCGCAATACACAGATCGCATCAGGTTATATTCCGTTTGTCATCAACATCAAATCACCac                                                                                                >  2:634926/1‑148 (MQ=255)
                                                                gacaacaAAGTCTCTGGATAGCGTCGTGCGGCCGACAAAGTACGCGTTATCTCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGAGCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAatttatt                                                                                     <  2:218516/148‑1 (MQ=255)
                                                                   aacaaATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAAtttatttta                                                                                  >  1:33212/1‑149 (MQ=255)
                                                                              tGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAaga                                                                       <  1:450666/149‑1 (MQ=255)
                                                                              tGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTAAAATCACCAACATACCTTACTTCATTTCAATAaga                                                                       <  2:535232/149‑1 (MQ=255)
                                                                               gTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAagat                                                                      >  2:328198/1‑149 (MQ=255)
                                                                                tatcACTTCATGTGCCTGACAAAGTACGCGTTATCCCTGCAGGATTTGGCTCCAGCGCCGTAGCCCACATACGCAGATCTCATCAGGTTCTGCTCCCCTTGTCATCAACCTCACATCACCAAACTGATTTTGTTTTTTTCAATAggata                                                                     >  2:124711/1‑149 (MQ=255)
                                                                                      ttCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCCAAATAATTTATTTTCTTTTCATAtgatgtattac                                                               >  2:136426/1‑142 (MQ=255)
                                                                                             tGCCCACAAAGTACGCGTTATCCGTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATATTTCGTTTTTCATCAGCCTCAAATCACCAAAATAATTTATCTTATTTCAATAAGATAGATAAGTAGAACt                                                        <  1:607932/149‑1 (MQ=255)
                                                                                                  aCAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTACAATAAGATAGATAAGTAGAACTAAGaa                                                   >  1:111824/1‑149 (MQ=255)
                                                                                                  aCAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAAGAATTTATTTTCTTTATAACAGATAGATAAGTAGAACTgagag                                                   >  2:31981/1‑148 (MQ=255)
                                                                                                    aaaGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAg                                                 >  2:90262/1‑149 (MQ=255)
                                                                                                        tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAATATAATTTATTTTATTTTATTTAGATAGATTGGTAGTACTGTGATAGCGAt                                             >  1:55652/1‑149 (MQ=255)
                                                                                                        tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCAt                                             <  1:411578/149‑1 (MQ=255)
                                                                                                        tACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATCCATTTCGCCCCAATAAGATAGATAAGTAGAACTGAGAAAGCCAt                                             <  1:173633/149‑1 (MQ=255)
                                                                                                          cgcgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGc                                           >  1:189389/1‑149 (MQ=255)
                                                                                                           gcgTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAATATAGATAAGTAGAACTGAGAAAGCCATGct                                          >  2:405816/1‑149 (MQ=255)
                                                                                                                aTCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAAGCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGt                                     <  1:4300/149‑1 (MQ=255)
                                                                                                                   tatGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTTAATAAGAAAGATAAGTAGAACTGAGAAAACGATGCTCTCGTTTc                                  >  2:558021/3‑149 (MQ=255)
                                                                                                                       ccGGATAGGGCGCTCGCGCCACATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTTTTTCAATAAGATAGATAAGTAGAAGTGATAAAGCCATGCTTTCGTTTCTTaa                              >  2:36620/1‑149 (MQ=255)
                                                                                                                          gATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAagag                           <  2:19704/149‑1 (MQ=255)
                                                                                                                            tgtgGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAgtt                         <  1:451821/149‑1 (MQ=255)
                                                                                                                             gtgGCGCGAGTGCCTTATGGGGCATACACGGATCGCATCAGGTTATGTTTCGTTGGTCATGAAACTCAAATCACCAAAATAATTTATTTTATTTTAATAAGATGGATAAGTGGATCTGAGAAAGCCATGTTGTCGTTTCCTAAGAgttg                        <  2:418516/149‑1 (MQ=255)
                                                                                                                               ggCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAgttgtt                      <  1:341151/149‑1 (MQ=255)
                                                                                                                                          ccTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATttattttatt                                                                                >  2:590978/1‑80 (MQ=255)
                                                                                                                                          ccTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATttattttatt                                                                                <  1:590978/80‑1 (MQ=255)
                                                                                                                                            tATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAACATAATTAATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCtata         >  1:100701/1‑149 (MQ=255)
                                                                                                                                                   cATACACAGATCGCATCATGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCTATATGTTACa  <  1:560774/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
ACTGCTTTTAGCCTTACGGTATAAGAAGTTGCGTTCCCTTTTTAACCGGTTACGCAAGCAGGTTCACAACAAATTATCTGTATAACTTCATATTGCCGACAAAGTACGCGTTATCCCTGCCGGATGTGGCGCGAGCGCCCTATCCGGCATACACAGATCGCATCAGGTTATGTTTCGTTTGTCATCAACCTCAAATCACCAAAATAATTTATTTTATTTCAATAAGATAGATAAGTAGAACTGAGAAAGCCATGCTCTCGTTTCCTAAGAGTTGTTGCATTTTGCTATATGTTACA  >  NC_000913_3_hsa_tpiA/2041034‑2041329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.