New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 316787921 (0.530)4 (0.110) 4/262 5.0 17.9% coding (368/396 nt) mqsA antitoxin for MqsR toxin; transcriptional repressor
?NC_000913_3_hsa_tpiA = 3167883 17 (0.460)coding (364/396 nt) mqsA antitoxin for MqsR toxin; transcriptional repressor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/3167818‑3167879
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttctggatAAGCATCCAGAACTATTGAATGAAATCCGTTAATTAATGGAAAAGCGGGGGCAACTCGCTTTTTTCTTTACCGGAGTGTGAGCCAAATCACTCGCGATAAGTTTGAGCGAACAATGCCACAGGCGTATTGTTGTTGGGCTTAT  <  NC_000913_3_hsa_tpiA/3167883‑3167741
                                                                                                                                                                                                             
GAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATAAGCATCCAGAACTATTGAA                                                                                                                             <  1:272896/82‑1
GAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATAAGCATCCAGAACTATTGAA                                                                                                                             >  2:272896/1‑82
   AAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATAAGCATCCAGAACTATTG                                                                                                                               <  1:191482/77‑1
   AAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATAAGCATCCAGAACTATTG                                                                                                                               >  2:191482/1‑77
                                                      TTCTGGATAAGCATCCAGAACTATTGAATGAAATCCGTTAATTAATGGAAAAGCGGGGGCAACTCGCTTTTTTCTTTACCGGAGTGTGAGCCAAATCACTCGCGATAGGTTTGAGCGAACAATGCCACAGGCGTCTTGTTGTTGGGCTTA   >  2:551187/1‑150
                                                       TCTGGATAAGCATCCAGAACTATTGAATGAAATCCGTTAATTAATGGAAAAGCGGGGTCAGCTCGCTTTTTTCTTTACCGGAGTGTGAGCCAAATCACTCGCGATAAGTTTGAGCGAACAATGCCACAGGCGTATTGTTGTTGGGCTTAT  <  2:390504/150‑1
                                                           GATAAGCATCCAGAACTATTGAATGAAATCCGTTAATTAATGGAAAAGCGGGGGCAACTCGCTTTTTTCTTTACCGGAGTGT                                                                  <  1:121577/82‑1
                                                           GATAAGCATCCAGAACTATTGAATGAAATCCGTTAATTAATGGAAAAGCGGGGGCAACTCGCTTTTTTCTTTACCGGAGTGT                                                                  >  2:121577/1‑82
                                                                                                                                                                                                             
GAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/3167818‑3167879
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttctggatAAGCATCCAGAACTATTGAATGAAATCCGTTAATTAATGGAAAAGCGGGGGCAACTCGCTTTTTTCTTTACCGGAGTGTGAGCCAAATCACTCGCGATAAGTTTGAGCGAACAATGCCACAGGCGTATTGTTGTTGGGCTTAT  <  NC_000913_3_hsa_tpiA/3167883‑3167741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.