New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 316787921 (0.530)4 (0.110) 4/262 5.0 17.9% coding (368/396 nt) mqsA antitoxin for MqsR toxin; transcriptional repressor
?NC_000913_3_hsa_tpiA = 3167883 17 (0.460)coding (364/396 nt) mqsA antitoxin for MqsR toxin; transcriptional repressor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAATTATAAGCCCAACAACAATACGCCTGTGGCATTGTTCGCTCAAACTTATCGCGAGTGATTTGGCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGAAAACGCATTTACACCTCCCCCAAAAATTTCGCTTGCCTCTTTTTGGGTAAGAGAGAGCTTTTTTCGAACCTTCACTAT  >  NC_000913_3_hsa_tpiA/3167735‑3168027
                                                                                                                                                    |                                                                                                                                                
gaAATTATAAGCCCAACAACAATACGCCTGTGGCAGTGGTCGCTCAAACTTATCGCGAGTGATTTGGCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATCCAATAGTTCTGGATGCttc                                                                                                                                                 >  2:410989/1‑149 (MQ=255)
      ataAGCCCAACAACAATACGCCTGTGGCATTGTTCGCTCAAACTTATCGCGAGTGATTTGGCTCACACTCCGGTAAAGAAAAAAGCGAGCTGACCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGa                                                                                                                                           >  2:390504/1‑150 (MQ=255)
       taAGCCCAACAACAAGACGCCTGTGGCATTGTTCGCTCAAACCTATCGCGAGTGATTTGGCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGaa                                                                                                                                          <  2:551187/150‑1 (MQ=255)
           cccAACAACCATACGCCTGGGGAATTGTCCGCTCAAACTTATCGCGAGTGATTTGGCTCACACCCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTCCTGGATGCTTATCCAGAACACg                                                                                                                                      <  2:82759/150‑1 (MQ=255)
            ccAACAACAATACGCCTGTGGCATTGTTCGCTCAAACTTATCGCGAGTGATTTGGCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTAAATAGTTCTGGATGCTTATCCAGAACACgg                                                                                                                                     >  1:391141/1‑149 (MQ=255)
                    aaTACGCCTGTGGCATTGTTCGCTCAAACTTATCGCGAGTCATATGGCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGAACACGTAAAAGttt                                                                                                                             <  1:368908/150‑1 (MQ=255)
                                                        gAGTGATTTGGCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTAGGCATTGCCTTTTTc                                                                                         >  2:651554/1‑150 (MQ=255)
                                                                  gCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGaa                                                                               >  1:613869/1‑150 (MQ=255)
                                                                      acacTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATc                                                                                                                                               >  1:121577/1‑82 (MQ=255)
                                                                      acacTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATc                                                                                                                                               <  2:121577/82‑1 (MQ=255)
                                                                      acacTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGAAAACg                                                                           >  1:427990/1‑150 (MQ=255)
                                                                        acTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGAAAACGCa                                                                         >  2:569285/1‑150 (MQ=255)
                                                                          tCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGGAAAGGCAtt                                                                       >  1:17979/1‑150 (MQ=255)
                                                                              gTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGAAATTCCTTCAATAGTTCTAGCTGCTTATCGAGAACACGTAAAAGTTTGACTATGGAAAGATGAGATTGGACATTGACTTTTTCGTAACGCAGAAACACATTTaaa                                                                   >  2:538285/1‑148 (MQ=255)
                                                                                    aaaaaaGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGAGAACGCATTTACACCTccc                                                             >  2:537878/1‑150 (MQ=255)
                                                                                                              cATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGAAAACGCATTTACACCTCCCCCAAAAATTTCGCTTGCCTCTTTTTg                                   <  1:390504/150‑1 (MQ=255)
                                                                                                                         ggATTTCATTCAATAGTTCTGGATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGAAAACGCATTTACACCTCCCCCAAAAATTTCGCTTGCCTCTTTTTGGGTAagagaga                        <  1:673940/150‑1 (MQ=255)
                                                                                                                                attcaATAGTTCTGGATGCTTATCCAGAACACGTAAAAGGTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGAAAACGCATTTACACCTCCCCCAAAATTTCGCTTGCCTCTTTTTGGGTAAGAGAGAGCtttttt                <  2:163052/150‑1 (MQ=255)
                                                                                                                                    aaTAGTTCTGGATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGACGGATGGGGTTGGGCATGGCCTTTTTCGTAACGCGAAAACGCATTTACACCTCACCCAAAAATTTCGCTTCCCTCTTTTTGGGTAAGAGAGGGCTTTTTTCGa             >  2:170675/1‑150 (MQ=255)
                                                                                                                                             ggATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGAAAACGCATTTACACCTCCCCCAAAAATTTCGCTTGCCTCTTTTTGGGTAAGAGAGAGCTTTTTTCGAACCTTCACt    >  1:198402/1‑150 (MQ=255)
                                                                                                                                                 gCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGAAAACGCATTTACACCTCCCCCAAAAATTTCGCTTGCCTCTTTTTGGGTAAGAGAGAGCTTTTTTCGAACCTTCACtat  >  2:52479/1‑148 (MQ=255)
                                                                                                                                                 gCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGAAAACGCATTTACACCTCCCCCAAAAATTTCGCTTGCCTCTTTTTGGGTAAGAGAGAGCTTTTTTCGAACCTTCACtat  <  1:52479/148‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                
GAAATTATAAGCCCAACAACAATACGCCTGTGGCATTGTTCGCTCAAACTTATCGCGAGTGATTTGGCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGGATTTCATTCAATAGTTCTGGATGCTTATCCAGAACACGTAAAAGTTTGATTGTGGAAGGATGAGGTTGGGCATTGCCTTTTTCGTAACGCGAAAACGCATTTACACCTCCCCCAAAAATTTCGCTTGCCTCTTTTTGGGTAAGAGAGAGCTTTTTTCGAACCTTCACTAT  >  NC_000913_3_hsa_tpiA/3167735‑3168027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.