New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 122614319 (0.770)4 (0.170) 4/266 2.8 17.5% intergenic (‑63/‑457) minC/ycgJ inhibitor of FtsZ ring polymerization/uncharacterized protein
?NC_000913_3_hsa_tpiA = 1226149 20 (0.870)intergenic (‑69/‑451) minC/ycgJ inhibitor of FtsZ ring polymerization/uncharacterized protein
Rejected: Frequency below/above cutoff threshold.

TCATGCAGATGAACCACAGATAAAGTGAAGCTACTGCCTTTAAGCTCGATTGGCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTATTCTGTGATAAATGGCGCTGATTCATAGCTTAAAAAATACCCTTGTCAATCAACCCATTGCCGTCGTACTTTTGATTGTTCTTATTTAC  >  NC_000913_3_hsa_tpiA/1226016‑1226297
                                                                                                                                     |                                                                                                                                                    
tCATGCAGATGAACCACAGATAAAGTGAAGCTACTGCCTTTAAGCTCGATTGGCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCAGCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATta                                                                                                                                       >  2:324449/1‑149 (MQ=255)
      aGATGAACCACAGATAAAGTGAAGCTACTGCCTTTAAGCTCGATTGGCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGa                                                                                                                                 >  2:193086/1‑149 (MQ=255)
       gATGAACCACAGATAAAGTGAAGCTACTGCCTTTAAGCTCGATTGGCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAg                                                                                                                                <  1:10039/149‑1 (MQ=255)
       gATGAACCACAGATAAAGTGAAGCTACTGCCTTTAAGCTCGATTGGCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAg                                                                                                                                <  1:193086/149‑1 (MQ=255)
        aTGAACCACAGATAAAGTGAAGCTACTGCCTTTAAGCCCGATTGGCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAgg                                                                                                                               <  1:150374/149‑1 (MQ=255)
              cacaGATAAAGTGAAGCTACTGCCTTTAAGCTCGATTGGCGTGTTTGACATCCTTGCCTTACTCAATTAGCTATTAATCATCGCCAGCTCGCGATGATTTTCCGAAGACTATAAGGCACGTTATAGTCTGGATTATATTGAGGctaatc                                                                                                                         >  2:288222/1‑144 (MQ=255)
                       aGTGAAGCTACTGCCTTTAAGCTCGATTGGCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCa                                                                                                                >  1:271186/1‑149 (MQ=255)
                                 cTGCCTTTAAGCTCGATTGGCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCaga                                                                                                      >  1:34090/1‑149 (MQ=255)
                                      tttAAGCTCGATTGGCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGATATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTaaa                                                                                                 <  2:404217/149‑1 (MQ=255)
                                             tCGATTGGCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTAt                                                                                          >  1:102727/1‑149 (MQ=255)
                                                    gCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTATTCTGTGa                                                                                   <  2:102727/149‑1 (MQ=255)
                                                                               aTTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTATTCTGTGATAAATGGCGCTGATTCATAGCTTaaaa                                                        >  1:390124/1‑149 (MQ=255)
                                                                                     tATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTATTCTGTGATAAATGGCGCTGATTCATAGCTTAAAAAATAcc                                                  >  1:128324/1‑149 (MQ=255)
                                                                                         aaTCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTATTCTGTGATAAATGGCGCTGATTCATAGCTTAAAAGATACCCTTg                                              >  1:347724/1‑149 (MQ=255)
                                                                                         aaTCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTAAGAGTGAAAGTCCATTCTGTGATAAATGGCGCTGATTCATAGCTTAAAAAATACCCTTg                                              >  1:297448/1‑149 (MQ=255)
                                                                                           tcatcGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTATTCTGTGATAAATGGCGCTGATTCATAGCTTAAAAAATACCCTTGtc                                            >  1:309247/1‑149 (MQ=255)
                                                                                              tcGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGttatagtcttcggaacatcatcgcgcgctggcgatgattaatagctaattgagtaaggccaggatgtcaaacacgc                                                                          <  2:159331‑M2/116‑77 (MQ=255)
                                                                                              tcGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGttatagtcttcggaacatcatcgcgcgctggcgatgattaatagctaattgagtaaggccaggatgtcaaacacgc                                                                          >  1:159331‑M2/1‑40 (MQ=255)
                                                                                                  cAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTATTCTGTGATAAATGGCGCTGATTCATAGCTTAAAAAATACCCTTGTCAATCAAc                                     <  1:324449/149‑1 (MQ=255)
                                                                                                                        gACTATAAGGCATGttatagtcttcggaacatcatcgcgcgctggcgatgattaatagctaatt                                                                                                    >  2:173873‑M2/1‑14 (MQ=255)
                                                                                                                        gACTATAAGGCATGttatagtcttcggaacatcatcgcgcgctggcgatgattaatagctaatt                                                                                                    <  1:173873‑M2/64‑51 (MQ=255)
                                                                                                                                   aTGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTATTCTGTGATAAATGGCGCTGATTCATAGCTTAAAAAATACCCTTGTCAATCAACCCATTGCCGTCGTACTTTTGATTGTTCTTAttt    >  1:2421/1‑149 (MQ=255)
                                                                                                                                    tGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTATTCTGTGATAAATGGCGCTGATTCATAGCTTAAAAAATACCCTTGTCAATCAACCCATTGCCGTCGTACTTTTGATTGTTCTTATTTa   >  2:172622/1‑149 (MQ=255)
                                                                                                                                     gTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTATCAAGCGATAAAGGGAGCTGCTTCATAGCTTAAAAAATACCCTTGTCAATCAACCCATTGCCGTCGTACTTTTGATCGTTCTTATTTAc  >  1:297781/1‑149 (MQ=255)
                                                                                                                                     |                                                                                                                                                    
TCATGCAGATGAACCACAGATAAAGTGAAGCTACTGCCTTTAAGCTCGATTGGCGTGTTTGACATCCTGGCCTTACTCAATTAGCTATTAATCATCGCCAGCGCGCGATGATGTTCCGAAGACTATAAGGCATGTTATAGTCTGGATTATATTGAGGCAAGTCACCCTCCCATTTATTCAGAGTAAAAGTCTATTCTGTGATAAATGGCGCTGATTCATAGCTTAAAAAATACCCTTGTCAATCAACCCATTGCCGTCGTACTTTTGATTGTTCTTATTTAC  >  NC_000913_3_hsa_tpiA/1226016‑1226297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.