mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 4,296,042 | 0 | C | T | 32.5% | 94.4 / 59.0 | 85 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_tpiA | 2,801,056 | 0 | A | T | 21.7% | 85.0 / 23.6 | 46 | N31I (AAT→ATT) | nrdI | NrdEF cluster assembly flavodoxin |
| Marginal new junction evidence (lowest skew 10 of 42 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 4542672 | 40 (0.740) | 7 (0.140) | 7/260 | 5.9 | 14.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | = 4542968 | 44 (0.870) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 3946053 | 5 (0.090) | 8 (0.150) | 6/270 | 6.5 | 62.2% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 732302 | 76 (1.400) | 6 (0.120) | 6/266 | 6.5 | 7.7% | coding (2720/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913_3_hsa_tpiA | = 732308 | 72 (1.390) | coding (2726/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 228108 | NA (NA) | 8 (0.150) | 6/270 | 6.5 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2316849 | 67 (1.240) | 5 (0.100) | 5/254 | 6.7 | 7.7% | noncoding (16/197 nt) | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site |
| ? | NC_000913_3_hsa_tpiA | = 2316857 | 59 (1.190) | noncoding (24/197 nt) | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site | RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 2229186 | 55 (1.020) | 5 (0.100) | 5/254 | 6.7 | 8.8% | intergenic (+121/+252) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| ? | NC_000913_3_hsa_tpiA | = 2229194 | 54 (1.090) | intergenic (+129/+244) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1080939 | 41 (0.760) | 5 (0.100) | 5/254 | 6.7 | 10.2% | intergenic (+126/‑417) | putP/efeU | proline:sodium symporter/ferrous iron permease (pseudogene) |
| ? | NC_000913_3_hsa_tpiA | = 2229174 | 51 (1.030) | intergenic (+109/+264) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C | |||||
| * | ? | NC_000913_3_hsa_tpiA | 915197 = | 58 (1.070) | 5 (0.100) | 5/254 | 6.7 | 8.8% | intergenic (‑340/+155) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | NC_000913_3_hsa_tpiA | = 2229174 | 51 (1.030) | intergenic (+109/+264) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3289918 = | 59 (1.090) | 7 (0.140) | 5/264 | 6.9 | 11.9% | coding (1105/2517 nt) | yraJ | putative outer membrane protein |
| ? | NC_000913_3_hsa_tpiA | 3289945 = | 48 (0.930) | coding (1132/2517 nt) | yraJ | putative outer membrane protein | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2118562 = | 83 (1.530) | 5 (0.100) | 5/264 | 6.9 | 6.4% | noncoding (97/186 nt) | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_hsa_tpiA | 2118594 = | 67 (1.300) | noncoding (129/186 nt) | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||