New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA = 33990455 (1.100)6 (0.120) 6/270 6.1 9.8% noncoding (148/358 nt) REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913_3_hsa_tpiA = 2538632 NA (NA)noncoding (98/98 nt) RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/339780‑339904
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATTTAAT  <  NC_000913_3_hsa_tpiA/2538632‑2538479
                                                                                                                                                                                                                                                                                       
ATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCCTCCGCCTCCGTTTACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATGCGCTACGCTTATCAGG                                                                                                                                    <  1:209729/149‑1
 TCCGGCCGACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTGGCGCATCAGGGCATTGGCACCGTTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATGCGCTACGCTTATCAGGC                                                                                                                                   <  1:209905/149‑1
   ctGCCGACGAATGGGGCACGCATCTGTAGGCCTGATAAGCGTAGGGCATCAGGCATTTGTCACCACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGTGAAAGAATCTGTAGGGCTGATGCGTTATGTTTATCACGCCT                                                                                                                                 <  2:9328/147‑1
                                                                                          CTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATGCGCTACGCTTATCAG                                                                                                                                     >  1:906656/1‑58
                                                                                          CTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATGCGCTACGCTTATCAG                                                                                                                                     <  2:906656/58‑1
                                                                                                                           cGGCCTGATGCGCTACGCTTGTCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGT         <  2:37558/148‑1
                                                                                                                              CCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATT      >  2:59072/1‑149
                                                                                                                                  ATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATTTAAT  <  2:609802/149‑1
                                                                                                                                                                                                                                                                                       
ATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_tpiA/339780‑339904
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGCGCACTTTTTTAACAGTTGTTGCTGCCGACAAATGCAGTATTTAAT  <  NC_000913_3_hsa_tpiA/2538632‑2538479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.