mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 224 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 3944978 | NA (NA) | 13 (0.290) | 10/268 | 3.8 | 53.1% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_hsa_tpiA | = 4038811 | 12 (0.260) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2727891 = | NA (NA) | 12 (0.270) | 9/268 | 4.1 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1207805 | 36 (0.770) | 8 (0.190) | 8/248 | 4.1 | 18.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | = 1209602 | 40 (0.970) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 227052 | 44 (0.940) | 12 (0.270) | 9/268 | 4.1 | 22.2% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_hsa_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | 2729630 = | NA (NA) | 10 (0.220) | 9/270 | 4.2 | NA | noncoding (1528/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_hsa_tpiA | 2729652 = | NA (NA) | noncoding (1506/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4542672 | 31 (0.660) | 9 (0.210) | 8/262 | 4.4 | 24.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | = 4542968 | 26 (0.600) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 1207790 = | 37 (0.790) | 7 (0.170) | 7/248 | 4.5 | 16.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1209619 = | 40 (0.970) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4492537 = | 66 (1.420) | 7 (0.160) | 7/266 | 4.8 | 10.2% | intergenic (‑30/+32) | idnT/idnO | L‑idonate and D‑gluconate transporter/5‑keto‑D‑gluconate‑5‑reductase |
| ? | NC_000913_3_hsa_tpiA | 4492555 = | 60 (1.360) | intergenic (‑48/+14) | idnT/idnO | L‑idonate and D‑gluconate transporter/5‑keto‑D‑gluconate‑5‑reductase | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 1351239 | 42 (0.900) | 9 (0.200) | 7/270 | 4.9 | 18.9% | intergenic (‑200/+168) | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| ? | NC_000913_3_hsa_tpiA | 3608707 = | 37 (0.820) | intergenic (+58/+44) | zntA/tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3376249 = | 58 (1.240) | 6 (0.140) | 6/256 | 5.1 | 10.3% | intergenic (+13/+30) | dcuD/sspB | putative transporter/ClpXP protease specificity enhancing factor |
| ? | NC_000913_3_hsa_tpiA | 3376278 = | 51 (1.200) | intergenic (+42/+1) | dcuD/sspB | putative transporter/ClpXP protease specificity enhancing factor | |||||