mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_tpiA | 1,158,854 | 1 | . | G | 27.3% | 40.0 / 25.5 | 22 | coding (986/1434 nt) | ptsG | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 1207790 = | 38 (1.180) | 5 (0.170) | 5/264 | 3.3 | 12.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_hsa_tpiA | 1209619 = | 35 (1.220) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_hsa_tpiA | 4542664 = | 21 (0.650) | 4 (0.130) | 4/278 | 3.9 | 13.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | 4542978 = | 31 (1.030) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | = 4542672 | 22 (0.680) | 3 (0.100) | 3/278 | 4.5 | 10.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_hsa_tpiA | = 4542968 | 31 (1.030) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_hsa_tpiA | 3541232 = | 39 (1.210) | 3 (0.100) | 3/282 | 4.5 | 7.9% | coding (826/2322 nt) | feoB | ferrous iron transporter protein B and GTP‑binding protein; membrane protein |
| ? | NC_000913_3_hsa_tpiA | 3541270 = | 33 (1.080) | coding (864/2322 nt) | feoB | ferrous iron transporter protein B and GTP‑binding protein; membrane protein | |||||